View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14919_high_15 (Length: 372)

Name: NF14919_high_15
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14919_high_15
NF14919_high_15
[»] chr2 (9 HSPs)
chr2 (5-272)||(29805961-29806221)
chr2 (300-372)||(29805863-29805935)
chr2 (1-41)||(28898036-28898076)
chr2 (1-41)||(27968920-27968960)
chr2 (1-41)||(28091627-28091667)
chr2 (1-41)||(28101859-28101899)
chr2 (5-41)||(31395583-31395619)
chr2 (1-41)||(37228500-37228540)
chr2 (1-41)||(42182891-42182931)
[»] chr8 (3 HSPs)
chr8 (1-41)||(1205829-1205869)
chr8 (1-41)||(31691649-31691689)
chr8 (1-41)||(13407323-13407363)
[»] chr7 (7 HSPs)
chr7 (1-41)||(27888422-27888462)
chr7 (1-47)||(22786153-22786199)
chr7 (1-41)||(13919782-13919822)
chr7 (1-41)||(13919921-13919961)
chr7 (1-41)||(17354665-17354705)
chr7 (5-41)||(25428482-25428518)
chr7 (1-41)||(27888284-27888324)
[»] chr4 (2 HSPs)
chr4 (1-41)||(37315565-37315605)
chr4 (1-41)||(2187813-2187853)
[»] chr5 (4 HSPs)
chr5 (1-32)||(42224590-42224621)
chr5 (1-39)||(28611778-28611816)
chr5 (5-41)||(29155528-29155564)
chr5 (1-41)||(42224729-42224769)
[»] chr6 (3 HSPs)
chr6 (5-47)||(10060994-10061036)
chr6 (1-30)||(4595892-4595921)
chr6 (1-41)||(19090214-19090254)
[»] chr3 (4 HSPs)
chr3 (1-47)||(29775141-29775187)
chr3 (5-41)||(24748913-24748949)
chr3 (1-41)||(27243047-27243087)
chr3 (1-41)||(29389151-29389191)
[»] chr1 (7 HSPs)
chr1 (1-47)||(13388336-13388382)
chr1 (1-41)||(11135741-11135781)
chr1 (1-41)||(11135880-11135920)
chr1 (1-41)||(11430581-11430621)
chr1 (1-41)||(30678911-30678951)
chr1 (1-41)||(41095608-41095648)
chr1 (1-41)||(41095747-41095787)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 5e-81; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 29806221 - 29805961
Alignment:
5 tagcaacactctcttttgagaactctctttaacactctcttttgaggaggaatgctagaannnnnnnnnatgcatgtctctcaccatagccttcatataa 104  Q
    |||||||||||||||||||| | ||||| |||||||||  ||||||||||||||||||||         |||||||||||||||||||||||||||||||    
29806221 tagcaacactctcttttgagcattctctctaacactct--tttgaggaggaatgctagaaaatatttttatgcatgtctctcaccatagccttcatataa 29806124  T
105 ttttcttcattttcattcgctgatgattaaat-tatttannnnnnnnggtcaagctgatgattaaaattatcatcaactaaacaatgcaaaagtggaggg 203  Q
    |||||||||||||||||||||||||||||| | |||||         ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
29806123 ttttcttcattttcattcgctgatgattaattatattt---ttttttggtcaagctgatgattaaaattatcatcaactaaacaatgcaaaagtggagtg 29806027  T
204 ataataattttgagttacaccgttttcttcaacacctcttgaatggtactattcaattatgtattatga 272  Q
    |||||   |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
29806026 ataat---tttgagttacacggttttcttcaacacctcttgaatggtactattcaattatgtattatga 29805961  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 372
Target Start/End: Complemental strand, 29805935 - 29805863
Alignment:
300 cacacatatcttagactattaatttgtttatgtggaggatagagactcgggttactctacgataaagaatgtt 372  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
29805935 cacacatatcttagactattcatttgtttatgtggaggatagagacttgggttactctacgataaagaatgtt 29805863  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28898036 - 28898076
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||| |||||||||| |||||    
28898036 atgctagcaacactctcttttgagtactctctttagcactc 28898076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 27968920 - 27968960
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||| ||||||| || |||||    
27968920 atgctagcaacactctcttttgagtactctctctagcactc 27968960  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28091667 - 28091627
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||| ||||||| || |||||    
28091667 atgctagcaacactctcttttgagtactctctctagcactc 28091627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28101899 - 28101859
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||| ||||||| || |||||    
28101899 atgctagcaacactctcttttgagtactctctctagcactc 28101859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 31395619 - 31395583
Alignment:
5 tagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||| |||||||||| |||||    
31395619 tagcaacactctcttttgagcactctctttagcactc 31395583  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37228500 - 37228540
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||| ||||||| || |||||    
37228500 atgctagcaacactctcttttgagcactctctctagcactc 37228540  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 42182891 - 42182931
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||| ||||||| || |||||    
42182891 atgctagcaacactctcttttgagcactctctctagcactc 42182931  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 1205829 - 1205869
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||| |||||||||| |||||    
1205829 atgctagcaacactctcttttgagcactctctttagcactc 1205869  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31691689 - 31691649
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
31691689 atgctagcaacactcacttttgaaaactctctttaacactc 31691649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13407323 - 13407363
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||  ||||||| ||||||||    
13407323 atgctagcaacactctcttttgaacactctctctaacactc 13407363  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27888462 - 27888422
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||| ||||||| ||||||||    
27888462 atgctagcaacactctcttttgagcactctctctaacactc 27888422  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22786153 - 22786199
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactctctttt 47  Q
    |||||||||||||||||||||||| ||||||| || ||||| |||||    
22786153 atgctagcaacactctcttttgagcactctctctagcactcactttt 22786199  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13919782 - 13919822
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||| ||||||| || |||||    
13919782 atgctagcaacactctcttttgagcactctctctagcactc 13919822  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 13919961 - 13919921
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||| ||||||| || |||||    
13919961 atgctagcaacactctcttttgagcactctctctagcactc 13919921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 17354705 - 17354665
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||| ||||||| ||||||| ||||||||    
17354705 atgctagcaacactcttttttgagcactctctctaacactc 17354665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 25428482 - 25428518
Alignment:
5 tagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||| |||||||||| |||||    
25428482 tagcaacactctcttttgagcactctctttagcactc 25428518  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 27888284 - 27888324
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    ||||||||||||||| |||||||| ||||||| ||||||||    
27888284 atgctagcaacactcacttttgagcactctctctaacactc 27888324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37315565 - 37315605
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||| ||||||| ||||||||    
37315565 atgctagcaacactctcttttgagcactctctctaacactc 37315605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2187813 - 2187853
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    ||||||||||||||| |||||||| ||||||| ||||||||    
2187813 atgctagcaacactcgcttttgagcactctctctaacactc 2187853  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 42224590 - 42224621
Alignment:
1 atgctagcaacactctcttttgagaactctct 32  Q
    ||||||||||||||||||||||||||||||||    
42224590 atgctagcaacactctcttttgagaactctct 42224621  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28611778 - 28611816
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacac 39  Q
    |||||||||||||||||||||||| ||||||| ||||||    
28611778 atgctagcaacactctcttttgagcactctctctaacac 28611816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 29155564 - 29155528
Alignment:
5 tagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||||||| | ||||||    
29155564 tagcaacactctcttttgagaactctctctgacactc 29155528  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 42224769 - 42224729
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||| ||||||| || |||||    
42224769 atgctagcaacactctcttttgagcactctctctagcactc 42224729  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 10061036 - 10060994
Alignment:
5 tagcaacactctcttttgagaactctctttaacactctctttt 47  Q
    |||||||||||||||||||| ||||||| |||||||| |||||    
10061036 tagcaacactctcttttgagcactctctctaacactcactttt 10060994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 4595921 - 4595892
Alignment:
1 atgctagcaacactctcttttgagaactct 30  Q
    ||||||||||||||||||||||||||||||    
4595921 atgctagcaacactctcttttgagaactct 4595892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 19090214 - 19090254
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||| ||||||| || |||||    
19090214 atgctagcaacactctcttttgagcactctctctagcactc 19090254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29775141 - 29775187
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactctctttt 47  Q
    |||||||||||||||||||||||| ||||||| || ||| |||||||    
29775141 atgctagcaacactctcttttgagcactctctctagcacactctttt 29775187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 24748913 - 24748949
Alignment:
5 tagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||| ||||||| ||||||||    
24748913 tagcaacactctcttttgagcactctctctaacactc 24748949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 27243047 - 27243087
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||  ||||||| ||||||||    
27243047 atgctagcaacactctcttttgaacactctctctaacactc 27243087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29389191 - 29389151
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    ||||||||||||||| |||||||| |||| |||||||||||    
29389191 atgctagcaacactcacttttgagcactcactttaacactc 29389151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13388336 - 13388382
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactctctttt 47  Q
    |||||||||||||||||||||||  ||||||| |||||||| |||||    
13388336 atgctagcaacactctcttttgaatactctctctaacactcactttt 13388382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11135741 - 11135781
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||| ||||||| || |||||    
11135741 atgctagcaacactctcttttgagcactctctctagcactc 11135781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 11135920 - 11135880
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||| ||||||| || |||||    
11135920 atgctagcaacactctcttttgaggactctctctagcactc 11135880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 11430621 - 11430581
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||| ||||||| || |||||    
11430621 atgctagcaacactctcttttgagcactctctctagcactc 11430581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 30678911 - 30678951
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||| ||||||| ||||||| ||||||||    
30678911 atgctagcaacactcttttttgagcactctctctaacactc 30678951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41095608 - 41095648
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||| ||||||| || |||||    
41095608 atgctagcaacactctcttttgagcactctctctagcactc 41095648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41095787 - 41095747
Alignment:
1 atgctagcaacactctcttttgagaactctctttaacactc 41  Q
    |||||||||||||||||||||||| ||||||| || |||||    
41095787 atgctagcaacactctcttttgagcactctctctagcactc 41095747  T

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