View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_high_17 (Length: 354)
Name: NF14919_high_17
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 34095290 - 34095621
Alignment:
| Q |
1 |
ggcattgatgaaaaaacactttgatcttcctcatcaacaacaacaggttttgaagtatggtgcattttcaccaactgggccatttcagtttcctcaacaa |
100 |
Q |
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| T |
34095290 |
ggcattgatgaaaaaacactttgatcttcctcatcaac---aacaggttttgaagtatggtgcattttcaccaactgggccatttcagtttcctcaacaa |
34095386 |
T |
|
| Q |
101 |
caaatgatgatgaatgaaaacaccaccaacaacaataataacactgttttggttggttctggttatgttccttttgttggttctaacgttggtgctggat |
200 |
Q |
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| T |
34095387 |
caaatgatgatgaatgaaaacaccaccaacaacaataataacactgttttggttggttctggttatgttccttttgttggttctaacgttggtgctggat |
34095486 |
T |
|
| Q |
201 |
ggattgtgcctaacaatcacaatcagaatcagaataacattaacaacagggttgttgttggtggcggtaactatggatctggttcactactttgtagtag |
300 |
Q |
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| T |
34095487 |
ggattgtgcctaacaatcagaatcagaatcagaataacattaaaaacagggttgttgttggtggtggtaactatggatctggttcactactttgtagtag |
34095586 |
T |
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| Q |
301 |
tagaaacccttttgagccttctaaagagctctctt |
335 |
Q |
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| T |
34095587 |
tagaaacccttttgagccttctaaagagctctctt |
34095621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 12294624 - 12294560
Alignment:
| Q |
49 |
tttgaagtatggtgcattttcaccaactgggccatttcagtttcctcaacaacaaatgatgatga |
113 |
Q |
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| T |
12294624 |
tttgaggtatggtgcattatcatcaaatgtgtcatttcagtttcctcaacaacaagtgatgatga |
12294560 |
T |
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