View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14919_high_19 (Length: 338)

Name: NF14919_high_19
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14919_high_19
NF14919_high_19
[»] chr4 (12 HSPs)
chr4 (173-338)||(44891733-44891898)
chr4 (173-311)||(11146839-11146977)
chr4 (244-338)||(44892340-44892434)
chr4 (244-334)||(11146306-11146396)
chr4 (39-99)||(11146705-11146765)
chr4 (39-99)||(44891972-44892032)
chr4 (1-41)||(11146619-11146659)
chr4 (1-41)||(44892078-44892118)
chr4 (296-338)||(29337168-29337210)
chr4 (298-338)||(8718943-8718983)
chr4 (279-314)||(51743919-51743954)
chr4 (300-338)||(7919463-7919501)
[»] chr1 (10 HSPs)
chr1 (173-338)||(26852986-26853151)
chr1 (244-338)||(26852449-26852543)
chr1 (39-99)||(26852852-26852912)
chr1 (279-338)||(38459420-38459478)
chr1 (279-338)||(38460678-38460736)
chr1 (1-41)||(26852766-26852806)
chr1 (285-338)||(49679763-49679816)
chr1 (302-338)||(38459912-38459948)
chr1 (302-338)||(38461063-38461099)
chr1 (302-333)||(17959272-17959303)
[»] chr5 (7 HSPs)
chr5 (173-338)||(43514364-43514529)
chr5 (244-338)||(43513828-43513922)
chr5 (39-99)||(43514230-43514290)
chr5 (279-333)||(12423279-12423332)
chr5 (298-338)||(12422530-12422570)
chr5 (1-41)||(43514144-43514184)
chr5 (298-338)||(4549255-4549294)
[»] chr7 (8 HSPs)
chr7 (279-338)||(47677478-47677537)
chr7 (278-338)||(34149492-34149552)
chr7 (278-338)||(34177572-34177632)
chr7 (255-338)||(2564748-2564830)
chr7 (275-335)||(44423503-44423563)
chr7 (247-338)||(11702272-11702362)
chr7 (248-338)||(47676797-47676886)
chr7 (298-338)||(22982793-22982832)
[»] chr2 (8 HSPs)
chr2 (279-338)||(44995654-44995713)
chr2 (290-338)||(45627820-45627868)
chr2 (244-333)||(11590738-11590827)
chr2 (244-333)||(44553248-44553337)
chr2 (275-325)||(16497690-16497740)
chr2 (278-338)||(45628527-45628586)
chr2 (286-331)||(2287731-2287776)
chr2 (278-335)||(44996375-44996431)
[»] chr3 (9 HSPs)
chr3 (279-338)||(30626482-30626540)
chr3 (291-338)||(37628431-37628478)
chr3 (300-338)||(43276390-43276428)
chr3 (266-338)||(45262802-45262874)
chr3 (298-338)||(912713-912753)
chr3 (290-325)||(329626-329661)
chr3 (247-338)||(36369841-36369931)
chr3 (291-338)||(37627735-37627781)
chr3 (275-325)||(49977690-49977740)
[»] chr6 (3 HSPs)
chr6 (244-333)||(19750099-19750188)
chr6 (293-338)||(13852974-13853019)
chr6 (296-338)||(33464346-33464388)
[»] chr8 (4 HSPs)
chr8 (298-338)||(3528023-3528063)
chr8 (277-333)||(3298132-3298187)
chr8 (298-338)||(3528788-3528827)
chr8 (279-315)||(37651702-37651738)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 173 - 338
Target Start/End: Complemental strand, 44891898 - 44891733
Alignment:
Q  173 cgatctccaatttcatcgtgagaaagacggtgnnnnnnnttaaaacaaaataacacagcgagttcacctggacaaccggttccaggttaaagaaatataa 272  Q
    |||||||||||||||| |||||||||||||||       ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44891898 cgatctccaatttcattgtgagaaagacggtgaaaaaaattaaaacaaaataacacagtgagttcacctggacaaccggttccaggttaaagaaatataa 44891799  T
Q  273 agagtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44891798 agagtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 44891733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 173 - 311
Target Start/End: Original strand, 11146839 - 11146977
Alignment:
Q  173 cgatctccaatttcatcgtgagaaagacggtgnnnnnnnttaaaacaaaataacacagcgagttcacctggacaaccggttccaggttaaagaaatataa 272  Q
    |||||||||||||||| |||||||||||||||       || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11146839 cgatctccaatttcattgtgagaaagacggtgaaaaaaatttaaacaaaataacacagtgagttcacctggacaaccggttccaggttaaagaaatataa 11146938  T
Q  273 agagtgggtgatgtggcaaattttaattggagtgtgtta 311  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  11146939 agagtgggtgatgcggcaaattttaattggagtgtgtta 11146977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 244 - 338
Target Start/End: Original strand, 44892340 - 44892434
Alignment:
Q  244 acaaccggttccaggttaaagaaatataaagagtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||||| ||| |||||||||  |||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44892340 acaacctgttacaggttaaatgaatacaaataatgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 44892434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 244 - 334
Target Start/End: Complemental strand, 11146396 - 11146306
Alignment:
Q  244 acaaccggttccaggttaaagaaatataaagagtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgt 334  Q
    |||||| ||| |||||||||  |||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11146396 acaacctgttacaggttaaatgaatacaaagaatgggtgatgtggcaaattttaattgaagtgtgttaaaagagtgtgttagggagtgtgt 11146306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 11146705 - 11146765
Alignment:
Q  39 aagatatggggatgaagatcaagcatgacataattttttattgaacacaaatattgacaga 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11146705 aagatatggggatgaagatcaagcatgacataattttttattgaacacaaatattgacaga 11146765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 44892032 - 44891972
Alignment:
Q  39 aagatatggggatgaagatcaagcatgacataattttttattgaacacaaatattgacaga 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44892032 aagatatggggatgaagatcaagcatgacataattttttattgaacacaaatattgacaga 44891972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11146619 - 11146659
Alignment:
Q  1 aggagccaattcatgtttctcgcatactgaaaacactcaag 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11146619 aggagccaattcatgtttctcgcatactgaaaacactcaag 11146659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 44892118 - 44892078
Alignment:
Q  1 aggagccaattcatgtttctcgcatactgaaaacactcaag 41  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  44892118 aggagccaattcatgtttcttgcatactgaaaacactcaag 44892078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 29337210 - 29337168
Alignment:
Q  296 taattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    ||||||| |||||||||||||||||||||| ||||||||||||    
T  29337210 taattggtgtgtgttaaaagagtgtgttagagagtgtgtccct 29337168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 8718983 - 8718943
Alignment:
Q  298 attggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  8718983 attggagtgtgtcaaaagagtgtgttagagagtgtgtccct 8718943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 314
Target Start/End: Complemental strand, 51743954 - 51743919
Alignment:
Q  279 ggtgatgtggcaaattttaattggagtgtgttaaaa 314  Q
    ||||||||||| ||||||||||||||||||||||||    
T  51743954 ggtgatgtggctaattttaattggagtgtgttaaaa 51743919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 7919501 - 7919463
Alignment:
Q  300 tggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  7919501 tggagtgtgttaaaagaatgtgttagggagtctgtccct 7919463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 173 - 338
Target Start/End: Original strand, 26852986 - 26853151
Alignment:
Q  173 cgatctccaatttcatcgtgagaaagacggtgnnnnnnnttaaaacaaaataacacagcgagttcacctggacaaccggttccaggttaaagaaatataa 272  Q
    |||||||||||||||| |||||||||||||||       ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26852986 cgatctccaatttcattgtgagaaagacggtgaaaaaaattaaaacaaaataacacagtgagttcacctggacaaccggttccaggttaaagaaatataa 26853085  T
Q  273 agagtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26853086 agagtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 26853151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 244 - 338
Target Start/End: Complemental strand, 26852543 - 26852449
Alignment:
Q  244 acaaccggttccaggttaaagaaatataaagagtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||||| ||| |||||||||  |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26852543 acaacctgttacaggttaaatgaatacaaagaatgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtatccct 26852449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 26852852 - 26852912
Alignment:
Q  39 aagatatggggatgaagatcaagcatgacataattttttattgaacacaaatattgacaga 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26852852 aagatatggggatgaagatcaagcatgacataattttttattgaacacaaatattgacaga 26852912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 38459478 - 38459420
Alignment:
Q  279 ggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  38459478 ggtgatgtggctaatttttattggagtgtgttaaa-gagtgtgttagggagtgtgtccct 38459420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 38460678 - 38460736
Alignment:
Q  279 ggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||    
T  38460678 ggtgatgtggctaatttttattggagtgtgtt-aaagagtgtgttagggagtgtgtccct 38460736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 26852766 - 26852806
Alignment:
Q  1 aggagccaattcatgtttctcgcatactgaaaacactcaag 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26852766 aggagccaattcatgtttctcgcatactgaaaacactcaag 26852806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 49679816 - 49679763
Alignment:
Q  285 gtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    ||||||| || ||||||| |||||||||||| ||||||||| ||||||||||||    
T  49679816 gtggcaatttataattggtgtgtgttaaaagggtgtgttagagagtgtgtccct 49679763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 38459948 - 38459912
Alignment:
Q  302 gagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||||||| ||||||||||||||||||||||||||||    
T  38459948 gagtgtgtcaaaagagtgtgttagggagtgtgtccct 38459912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 38461063 - 38461099
Alignment:
Q  302 gagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||||||| ||||||||||||||||||||||||||||    
T  38461063 gagtgtgtcaaaagagtgtgttagggagtgtgtccct 38461099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 302 - 333
Target Start/End: Original strand, 17959272 - 17959303
Alignment:
Q  302 gagtgtgttaaaagagtgtgttagggagtgtg 333  Q
    ||||||||||||||||||||||||||||||||    
T  17959272 gagtgtgttaaaagagtgtgttagggagtgtg 17959303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 173 - 338
Target Start/End: Original strand, 43514364 - 43514529
Alignment:
Q  173 cgatctccaatttcatcgtgagaaagacggtgnnnnnnnttaaaacaaaataacacagcgagttcacctggacaaccggttccaggttaaagaaatataa 272  Q
    |||||||||||||||| |||||||||||||||       |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  43514364 cgatctccaatttcattgtgagaaagacggtgaaaaaaattaaaacaaaataacacagtaagttcacctggacaaccggttccaggttaaagaaatataa 43514463  T
Q  273 agagtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43514464 agagtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 43514529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 244 - 338
Target Start/End: Complemental strand, 43513922 - 43513828
Alignment:
Q  244 acaaccggttccaggttaaagaaatataaagagtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||||| ||| |||||||||  |||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43513922 acaacctgttacaggttaaatgaatacaaataatgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 43513828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 43514230 - 43514290
Alignment:
Q  39 aagatatggggatgaagatcaagcatgacataattttttattgaacacaaatattgacaga 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43514230 aagatatggggatgaagatcaagcatgacataattttttattgaacacaaatattgacaga 43514290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 12423279 - 12423332
Alignment:
Q  279 ggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtg 333  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  12423279 ggtgatgtggctaatttttattggagtgtgtt-aaagagtgtgttagggagtgtg 12423332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 12422570 - 12422530
Alignment:
Q  298 attggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  12422570 attggagtgtgtcaaaagagtgtgttagggagtgtgtccct 12422530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 43514144 - 43514184
Alignment:
Q  1 aggagccaattcatgtttctcgcatactgaaaacactcaag 41  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  43514144 aggagccaattcatgtttcttgcatactgaaaacactcaag 43514184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 4549255 - 4549294
Alignment:
Q  298 attggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  4549255 attggagtgtgtcaaa-gagtgtgttagggagtgtgtccct 4549294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 47677478 - 47677537
Alignment:
Q  279 ggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47677478 ggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 47677537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 34149552 - 34149492
Alignment:
Q  278 gggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||||||||||||| |||| |||||||||||||||| ||||||||||| | ||||||||||    
T  34149552 gggtgatgtggcaattttttattggagtgtgttaaatgagtgtgttagagggtgtgtccct 34149492  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 34177572 - 34177632
Alignment:
Q  278 gggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||||||||||||| |||| |||||||||||||||| ||||||||||| | ||||||||||    
T  34177572 gggtgatgtggcaattttttattggagtgtgttaaatgagtgtgttagagggtgtgtccct 34177632  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 338
Target Start/End: Complemental strand, 2564830 - 2564748
Alignment:
Q  255 caggttaaagaaatataaagagtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    ||||| ||| ||||| ||||| ||| ||||||||| |||||  ||||||||||||| ||||||| |||||||||||||| ||||    
T  2564830 caggtgaaataaataaaaagaatggatgatgtggctaatttctattggagtgtgtt-aaagagtatgttagggagtgtgaccct 2564748  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 44423503 - 44423563
Alignment:
Q  275 agtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtc 335  Q
    ||||| ||||||||| | || | |||||||||||||| |||||||||||| ||||||||||    
T  44423503 agtggatgatgtggctagttattattggagtgtgttataagagtgtgttaaggagtgtgtc 44423563  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 11702362 - 11702272
Alignment:
Q  247 accggttccaggttaaagaaatataaagagtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    ||||||| |||||||||  |||| ||| | |  |||||||||| |||||| ||||||||||| | |||||||||||||| | ||||||||||    
T  11702362 accggttacaggttaaaagaataaaaaaaataagtgatgtggctaattttcattggagtgtg-tcaaagagtgtgttagagggtgtgtccct 11702272  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 338
Target Start/End: Complemental strand, 47676886 - 47676797
Alignment:
Q  248 ccggttccaggttaaagaaatataaagagtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    ||||| ||||||||||  |||  |||||  ||||||||||   || ||| |||||||||||||| | ||||||||||||||||||||||||    
T  47676886 ccggtgccaggttaaaataattaaaagaaggggtgatgtgattaaattttattggagtgtgttaga-gagtgtgttagggagtgtgtccct 47676797  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 22982832 - 22982793
Alignment:
Q  298 attggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  22982832 attggagtgtgttaaa-gagtgtgttagggagtgtgaccct 22982793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 44995713 - 44995654
Alignment:
Q  279 ggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||    
T  44995713 ggtgatgtggcaaattttaattggagtgtgttaaaagagtatgttagagagtttgtccct 44995654  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 45627868 - 45627820
Alignment:
Q  290 aaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45627868 aaattttaattggagtgtgttaaaagagtgtgttagggagtttgtccct 45627820  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 244 - 333
Target Start/End: Original strand, 11590738 - 11590827
Alignment:
Q  244 acaaccggttccaggttaaagaaatataaagagtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtg 333  Q
    |||||||||| | |||||| |||||| ||||||||  |||  ||||||||| | |||||||||||| ||||||||||||||| |||||||    
T  11590738 acaaccggttgctggttaatgaaataaaaagagtgtatgagatggcaaattatgattggagtgtgtcaaaagagtgtgttagagagtgtg 11590827  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 333
Target Start/End: Complemental strand, 44553337 - 44553248
Alignment:
Q  244 acaaccggttccaggttaaagaaatataaagagtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtg 333  Q
    |||||||||| | |||||| |||||| ||||||||  |||  ||| ||||| | |||||||||||| ||||||||||||||| |||||||    
T  44553337 acaaccggttgctggttaatgaaataaaaagagtgtatgagatggtaaattatgattggagtgtgtcaaaagagtgtgttagagagtgtg 44553248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 325
Target Start/End: Original strand, 16497690 - 16497740
Alignment:
Q  275 agtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttag 325  Q
    ||||| ||||||||  |||||| ||||||||||||||||||||||||||||    
T  16497690 agtggatgatgtgggtaattttgattggagtgtgttaaaagagtgtgttag 16497740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 45628527 - 45628586
Alignment:
Q  278 gggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||||||||||  || ||| |||||||||||||| | ||||||||||||||||||||||||    
T  45628527 gggtgatgtggttaaattttattggagtgtgttaga-gagtgtgttagggagtgtgtccct 45628586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 2287776 - 2287731
Alignment:
Q  286 tggcaaattttaattggagtgtgttaaaagagtgtgttagggagtg 331  Q
    ||||||||||| ||||| ||||||||||| |||| |||||||||||    
T  2287776 tggcaaatttttattggtgtgtgttaaaatagtgcgttagggagtg 2287731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 44996375 - 44996431
Alignment:
Q  278 gggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtc 335  Q
    |||||||||||  || ||| |||||||||||||| | |||||||||||||||||||||    
T  44996375 gggtgatgtggttaaattttattggagtgtgttaga-gagtgtgttagggagtgtgtc 44996431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 30626540 - 30626482
Alignment:
Q  279 ggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||||||||||||| ||||    
T  30626540 ggtgatgtggctaatttttattggagtgtgtt-aaagagtgtgttagggagtgtgaccct 30626482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 37628431 - 37628478
Alignment:
Q  291 aattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||    
T  37628431 aattttgattggtgtgtgttaaaagagtgtgttagggagtgtgtccct 37628478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 43276428 - 43276390
Alignment:
Q  300 tggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43276428 tggagtgtgttaaaagagtgtgttagggagtgtgtccct 43276390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 45262874 - 45262802
Alignment:
Q  266 aatataaagagtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||| ||||||||| ||||||||| |||| | |||||||| ||||| | ||||| ||||||||||||||||||    
T  45262874 aataaaaagagtggatgatgtggctaattatcattggagtatgttataggagtgagttagggagtgtgtccct 45262802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 912753 - 912713
Alignment:
Q  298 attggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||||||||||| |||||||||||||||||||| |||||||    
T  912753 attggagtgtgtcaaaagagtgtgttagggagtatgtccct 912713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 290 - 325
Target Start/End: Original strand, 329626 - 329661
Alignment:
Q  290 aaattttaattggagtgtgttaaaagagtgtgttag 325  Q
    |||||||||||| |||||||||||||||||||||||    
T  329626 aaattttaattgaagtgtgttaaaagagtgtgttag 329661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 36369841 - 36369931
Alignment:
Q  247 accggttccaggttaaagaaatataaagagtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    ||||||||||||||||| ||| | |||||   | |||||||||   |||| ||||||||||||| ||||||| |||||||||||||| ||||    
T  36369841 accggttccaggttaaaaaaacaaaaagaagtgatgatgtggctggtttttattggagtgtgtt-aaagagtatgttagggagtgtgaccct 36369931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 37627781 - 37627735
Alignment:
Q  291 aattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  37627781 aattttgattggtgtgtgttaaa-gagtgtgttagggagtgtgtccct 37627735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 325
Target Start/End: Original strand, 49977690 - 49977740
Alignment:
Q  275 agtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttag 325  Q
    ||||||||||||||| |||| | ||| ||||||||||||||||||| ||||    
T  49977690 agtgggtgatgtggctaattgtcatttgagtgtgttaaaagagtgttttag 49977740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 333
Target Start/End: Original strand, 19750099 - 19750188
Alignment:
Q  244 acaaccggttccaggttaaagaaatataaagagtgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtg 333  Q
    ||||| |||| | |||||| |||||| ||||||||  |||  ||||||||| | |||||||||||| ||||||||||||||| |||||||    
T  19750099 acaacaggttgctggttaatgaaataaaaagagtgtatgagatggcaaattatgattggagtgtgtcaaaagagtgtgttagagagtgtg 19750188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 13852974 - 13853019
Alignment:
Q  293 ttttaattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||    
T  13852974 ttttgattggtgtgtgttaaaagagtgtgttagggagtgtgaccct 13853019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 33464346 - 33464388
Alignment:
Q  296 taattggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    ||||||| |||||||||||| ||||||||| ||||||||||||    
T  33464346 taattggtgtgtgttaaaagggtgtgttagagagtgtgtccct 33464388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 3528063 - 3528023
Alignment:
Q  298 attggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  3528063 attggagtgtgtcaaaagagtgtgttagggagtgtgtccct 3528023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 3298132 - 3298187
Alignment:
Q  277 tgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtg 333  Q
    ||||||||||| | | |||| |||||||||||||||| |||||||||||||||||||    
T  3298132 tgggtgatgtgtctatttttgattggagtgtgttaaa-gagtgtgttagggagtgtg 3298187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 3528788 - 3528827
Alignment:
Q  298 attggagtgtgttaaaagagtgtgttagggagtgtgtccct 338  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  3528788 attggagtgtgtcaaa-gagtgtgttagggagtgtgtccct 3528827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 37651738 - 37651702
Alignment:
Q  279 ggtgatgtggcaaattttaattggagtgtgttaaaag 315  Q
    ||||||||| | |||||||||||||||||||||||||    
T  37651738 ggtgatgtgtctaattttaattggagtgtgttaaaag 37651702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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