View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14919_high_4 (Length: 549)
Name: NF14919_high_4
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 40617998 - 40617729
Alignment:
| Q |
19 |
ttatagtttagaatgaattaagtatgattaaaagactcgcaaaaactagtcaaaacttgcaatttgttccaattttcaaaattagatgctcaatttgtat |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40617998 |
ttatagtttagaatgaattaagtataattaaaagactcgcaaaaactagtcaaaacttgctatttgttccaattttcaaaattagatgctcaatttgtat |
40617899 |
T |
|
| Q |
119 |
tct-agttaggtataataa---ctccatggtgggtacaatacaacatttgggactctatatatatggacatgcaattgccctatatatgccaaagtaaca |
214 |
Q |
| |
|
||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40617898 |
tctgatttaggtataataataactccatggtgggtacaatacaacatttgggactctatatatatggacatgcaattgccctatatatgccaaagtaaca |
40617799 |
T |
|
| Q |
215 |
cttgaagctcgagcacacaaaatctactcactctctattctaatctcaatggcccagatatcaaatcttg |
284 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40617798 |
cttgaagctcaagcacacaaaaactactcactctctattctaatctcaatggctcagatatcaaatcttg |
40617729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 311 - 530
Target Start/End: Complemental strand, 40617702 - 40617483
Alignment:
| Q |
311 |
aacatcataaacggtccattcctcacggatgctatttcctcatgcaatggaccttgtagaactctcaacgactgcgctggtcaactcatttgcatcaacg |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40617702 |
aacatcataaacggtccattcctcacggatgctatttcctcatgcaacggaccttgtagaactctcaacgactgcgctggtcaactcatttgcatcaacg |
40617603 |
T |
|
| Q |
411 |
gaaaatgcaacgatgaccctgacgttgggacccgcatctgctcccaaccatcaccttcaccaccaccaccaagcggggatggtgggacttgccgaacctc |
510 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40617602 |
gaaaatgcaacgatgaccctgacgttggaacccgcatctgctcccaaccatcaccttcaccaccaccaccaagcgggggtggtgggacttgccgaacctc |
40617503 |
T |
|
| Q |
511 |
cggcaacttacagtgcgatg |
530 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
40617502 |
tggcaacttacagtgcgatg |
40617483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 40640938 - 40641069
Alignment:
| Q |
311 |
aacatcataaacggtccattcctcacggatgctatttcctcatgcaatggaccttgtagaactctcaacgactgcgctggtcaactcatttgcatcaacg |
410 |
Q |
| |
|
|||||||||||| ||||||||| || ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40640938 |
aacatcataaacattccattccttacaaatgttatttcctcatgcaacggaccttgtaaaactctcaacgactgcgctggtcaactcatttgcatcaatg |
40641037 |
T |
|
| Q |
411 |
gaaaatgcaacgatgaccctgacgttgggacc |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
40641038 |
gaaaatgcaacgatgaccctgacgttgggacc |
40641069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 325 - 475
Target Start/End: Complemental strand, 40628260 - 40628110
Alignment:
| Q |
325 |
tccattcctcacggatgctatttcctcatgcaatggaccttgtagaactctcaacgactgcgctggtcaactcatttgcatcaacggaaaatgcaacgat |
424 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| || | |||||||| || || | |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40628260 |
tccattcctcacaaatgctatttcctcatgcaatggaccatgcaacactctcaatgattgtgatggtcaactcatttgcatcaacggcaaatgcaacgat |
40628161 |
T |
|
| Q |
425 |
gaccctgacgttgggacccgcatctgctcccaaccatcaccttcaccacca |
475 |
Q |
| |
|
||||| ||| ||||||||| ||||||| || | || ||||| ||||||||| |
|
|
| T |
40628160 |
gaccccgacattgggacccacatctgcaccaatccctcaccgtcaccacca |
40628110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 451
Target Start/End: Complemental strand, 40611003 - 40610925
Alignment:
| Q |
373 |
tctcaacgactgcgctggtcaactcatttgcatcaacggaaaatgcaacgatgaccctgacgttgggacccgcatctgc |
451 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||| || ||||||||| ||||||| |
|
|
| T |
40611003 |
tctcaacgactgttatggtcaactcatttgcatcaacggaaaatgtaacgatgacccagatattgggacccacatctgc |
40610925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 155
Target Start/End: Complemental strand, 40628503 - 40628426
Alignment:
| Q |
79 |
aatttgttccaattttcaaaattagatgctcaattt-gtattctagttaggtataataactccatggtgggtacaata |
155 |
Q |
| |
|
||||||||||||||||||| || || ||| ||||| || || ||||||||| |||||||||| || ||||||||||| |
|
|
| T |
40628503 |
aatttgttccaattttcaacataggaggctgaattttgttttttagttaggtgtaataactccttgatgggtacaata |
40628426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University