View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14919_high_41 (Length: 227)
Name: NF14919_high_41
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_high_41 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 18810268 - 18810483
Alignment:
| Q |
1 |
agactaataaaagagctctaaaagctttgctcattcttttttaggcgtcttctggttttaaagtgaattttcataaaagtatgttacttgaggttaatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18810268 |
agactaataaaagagctctaaaagctttgcttattctttttgaggcgtcttctgattttaaagtgaattttcataaaagtatgttacttgaggttaatat |
18810367 |
T |
|
| Q |
101 |
ccatgattcttggctagctgaagtatcctctattttgaactataaaatgggtgagctcccttttctttacttggggctgcctattggtggtgttcaattt |
200 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18810368 |
ccatgattcttggttagctgaaatatcctctattttgaactataaaatgggtgagatcccttttctttacttggggctgcctattggtggtgttgaattt |
18810467 |
T |
|
| Q |
201 |
ttggcgtcctttgctt |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
18810468 |
ttggcgtcctttgctt |
18810483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 24092819 - 24092890
Alignment:
| Q |
12 |
agagctctaaaagctttgctcattcttttttaggcgtcttctggttttaaagtgaattttcataaaagtatg |
83 |
Q |
| |
|
|||||||| ||| ||||||||||||| ||| ||||| | |||||| |||||||||| || || ||||||||| |
|
|
| T |
24092819 |
agagctctgaaaactttgctcattctctttgaggcgacatctggtcttaaagtgaacttccacaaaagtatg |
24092890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 19322601 - 19322702
Alignment:
| Q |
12 |
agagctctaaaagctttgctcattcttttttaggcgtcttctggttttaaagtgaattttcataaaagtatgttacttgaggttaatatccatgattctt |
111 |
Q |
| |
|
|||||||| |||||||||||| |||||||| | ||| |||| || |||||||||| || || || ||||||||| ||| |||||||| |||||||||| |
|
|
| T |
19322601 |
agagctctgaaagctttgctccttctttttgaagcgacttcaggccttaaagtgaacttccacaagagtatgttagttggtgttaatattcatgattctt |
19322700 |
T |
|
| Q |
112 |
gg |
113 |
Q |
| |
|
|| |
|
|
| T |
19322701 |
gg |
19322702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 18306484 - 18306383
Alignment:
| Q |
12 |
agagctctaaaagctttgctcattcttttttaggcgtcttctggttttaaagtgaattttcataaaagtatgttacttgaggttaatatccatgattctt |
111 |
Q |
| |
|
|||||||| |||||||| ||| |||||||| | | | |||| ||| |||||||||| || || |||| ||||||| ||| ||||| || |||||||||| |
|
|
| T |
18306484 |
agagctctgaaagctttactccttctttttgaagagacttcaggtcttaaagtgaacttccacaaaaatatgttagttggtgttaacattcatgattctt |
18306385 |
T |
|
| Q |
112 |
gg |
113 |
Q |
| |
|
|| |
|
|
| T |
18306384 |
gg |
18306383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 12911483 - 12911543
Alignment:
| Q |
58 |
ttaaagtgaattttcataaaagtatgttacttgaggttaatatccatgattcttggctagc |
118 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||| ||||||||| ||||||||||||||| |
|
|
| T |
12911483 |
ttaaggtgaattttcataaaagtatgctagttggtattaatatccgtgattcttggctagc |
12911543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 134
Target Start/End: Complemental strand, 17914826 - 17914704
Alignment:
| Q |
12 |
agagctctaaaagctttgctcattcttttttaggcgtcttctggttttaaagtgaattttcataaaagtatgttacttgaggttaatatccatgattctt |
111 |
Q |
| |
|
|||||||| ||| || | |||||||| ||| | ||| | |||||| | |||||||| || || |||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
17914826 |
agagctctgaaaactcttctcattctctttgaagcgacatctggtctcaaagtgaacttccacaaaagtatgttagttggcgttaatattcatgattctt |
17914727 |
T |
|
| Q |
112 |
ggctagctgaagtatcctctatt |
134 |
Q |
| |
|
|| | ||||| | | |||||||| |
|
|
| T |
17914726 |
ggttggctgaggcagcctctatt |
17914704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 26370660 - 26370559
Alignment:
| Q |
12 |
agagctctaaaagctttgctcattcttttttaggcgtcttctggttttaaagtgaattttcataaaagtatgttacttgaggttaatatccatgattctt |
111 |
Q |
| |
|
|||||||| |||||| | |||||||| ||| | ||| | |||||| | || ||||| || || |||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
26370660 |
agagctctgaaagctcttctcattctctttgaagcgacatctggtctcaaggtgaacttccacaaaagtatgttagttggtgttaatattcatgattctt |
26370561 |
T |
|
| Q |
112 |
gg |
113 |
Q |
| |
|
|| |
|
|
| T |
26370560 |
gg |
26370559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 48639104 - 48639205
Alignment:
| Q |
12 |
agagctctaaaagctttgctcattcttttttaggcgtcttctggttttaaagtgaattttcataaaagtatgttacttgaggttaatatccatgattctt |
111 |
Q |
| |
|
|||||||| |||||| | |||||||| ||| | ||| | |||||| | |||||||| || || ||||| |||||| ||| |||||||| |||||||||| |
|
|
| T |
48639104 |
agagctctgaaagctcttctcattctctttgaagcgacatctggtctcaaagtgaacttccacaaaagcatgttagttggtgttaatattcatgattctt |
48639203 |
T |
|
| Q |
112 |
gg |
113 |
Q |
| |
|
|| |
|
|
| T |
48639204 |
gg |
48639205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 12690467 - 12690403
Alignment:
| Q |
49 |
cttctggttttaaagtgaattttcataaaagtatgttacttgaggttaatatccatgattcttgg |
113 |
Q |
| |
|
|||||||| |||| ||||| || || |||||||||||| ||| |||||||| |||||||||||| |
|
|
| T |
12690467 |
cttctggtcttaaggtgaacttccacaaaagtatgttagttggtgttaatattcatgattcttgg |
12690403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University