View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14919_high_8 (Length: 423)

Name: NF14919_high_8
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14919_high_8
NF14919_high_8
[»] chr1 (9 HSPs)
chr1 (11-407)||(29813998-29814383)
chr1 (241-407)||(48052491-48052657)
chr1 (233-407)||(48039517-48039690)
chr1 (241-374)||(48034152-48034284)
chr1 (23-137)||(48052734-48052845)
chr1 (74-375)||(48053785-48054068)
chr1 (293-369)||(48048102-48048178)
chr1 (72-157)||(48039751-48039836)
chr1 (72-127)||(48034372-48034427)
[»] chr8 (1 HSPs)
chr8 (72-130)||(32977121-32977179)
[»] chr6 (1 HSPs)
chr6 (23-120)||(32678934-32679028)


Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 407
Target Start/End: Original strand, 29813998 - 29814383
Alignment:
Q  11 cagagaccacactgataaagcaatgcaagcccaaaaatgctgagattggtggtgctacatatggatttctgtctatgctcccattttctggggcaggggt 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29813998 cagaaaccacactgataaagcaatgcaagcccaaaaatgctgagattggtggtgctacatatggatttctgtctatgctcccattttctggggcaggggt 29814097  T
Q  111 aatttctaggctttaaccatcgtgcttcacgaatttttctgcattttcttgttattgtcatatttattgaaatcagggcttctcagggcttctgtcaaag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||    
T  29814098 aatttctaggctttaaccatcgtgcttcacgaatttttctgcattttcttgttattgtcatatttattgaaatcag----------ggcttctgtcaaag 29814187  T
Q  211 ccaagaagttttctgtttgaaatttgaacttttccctttaattttgataaaaggaaggagtctcagctgttagctgaaataacctcaatgtattttacgc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29814188 ccaagaagttttctgtttgaaatttgaacttttccctttaattttgataaaaggaaggagtctcagctgttagctgaaataacctcaatgtattttacgc 29814287  T
Q  311 attggatctcttctttccttacagtaaaaatttgaattcatcaaagagaatgaaaacttacaaagacgttgttatggttttgtgtgacatttcaaaa 407  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29814288 attggatctcttctttccttacagtaaaaatttg-attcatcaaagagaatgaaaacttacaaagacgttgttatggttttgtgtgacatttcaaaa 29814383  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 48052657 - 48052491
Alignment:
Q  241 tttccctttaattttgataaaaggaaggagtctcagctgttagctgaaataacctcaatgtattttacgcattggatctcttctttccttacagtaaaaa 340  Q
    ||||||||||||||  |||||||||| ||  |||| |||||| ||| |||||||||| ||||||||| |||||||||| ||||||| | |||||| ||||    
T  48052657 tttccctttaatttcaataaaaggaatgaaactcaactgttaactgcaataacctcactgtattttatgcattggatcgcttcttttcctacagttaaaa 48052558  T
Q  341 tttgaattcatcaaagagaatgaaaacttacaaagacgttgttatggttttgtgtgacatttcaaaa 407  Q
     |||||||||||||||| |||||||||||||||| |  |||| ||| || ||||||| | |||||||    
T  48052557 attgaattcatcaaagacaatgaaaacttacaaacatattgtgatgattatgtgtgatagttcaaaa 48052491  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 233 - 407
Target Start/End: Complemental strand, 48039690 - 48039517
Alignment:
Q  233 tttgaacttttccctttaattttgataaaaggaaggagtctcagctgttagctgaaataacctcaatgtattttacgcattggatctcttctttccttac 332  Q
    ||||||| |||||||||||||| |||||| |||| ||  |||| |||||| ||| |||||||||| ||||||||| ||||||||| |||||||| | |||    
T  48039690 tttgaacctttccctttaatttcgataaa-ggaatgaaactcaactgttaactgcaataacctcactgtattttatgcattggatatcttcttttcctac 48039592  T
Q  333 agtaaaaatttgaattcatcaaagagaatgaaaacttacaaagacgttgttatggttttgtgtgacatttcaaaa 407  Q
    ||| || | |||||||||||||||| ||||||||||||| || |  |||| ||| || ||||||| |||||||||    
T  48039591 agttaacaattgaattcatcaaagacaatgaaaacttaccaacatattgtaatgattatgtgtgatatttcaaaa 48039517  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 241 - 374
Target Start/End: Complemental strand, 48034284 - 48034152
Alignment:
Q  241 tttccctttaattttgataaaaggaaggagtctcagctgttagctgaaataacctcaatgtattttacg-cattggatctcttctttccttacagtaaaa 339  Q
    |||| |||||||||||||||||||||| |  ||||| ||||||||| ||||||||||  || ||||| | |||||||||||||  || ||||||||||||    
T  48034284 tttctctttaattttgataaaaggaagaaaactcagatgttagctgcaataacctca--gttttttatgacattggatctctttgtttcttacagtaaaa 48034187  T
Q  340 atttgaattcatcaaagagaatgaaaacttacaaa 374  Q
    |  ||||||||||||||| |||||||||| |||||    
T  48034186 aactgaattcatcaaagacaatgaaaactgacaaa 48034152  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 48052845 - 48052734
Alignment:
Q  23 tgataaagcaatgcaagcccaaaaatgctgagattggtggtgctacatatggatttctgtctatgctcccattttctggggcaggggtaatttctaggct 122  Q
    |||||||||||| ||||||||||||||||||||||| || || ||| |  ||||||||| ||||||| ||||||  |||||||||| |||| |||||||     
T  48052845 tgataaagcaattcaagcccaaaaatgctgagattgatgttg-tacct--ggatttctggctatgcttccatttcttggggcagggataatatctaggcc 48052749  T
Q  123 ttaaccatcgtgctt 137  Q
    |||||||||||||||    
T  48052748 ttaaccatcgtgctt 48052734  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 375
Target Start/End: Complemental strand, 48054068 - 48053785
Alignment:
Q  74 gatttctgtctatgctcccattttctggggcaggggtaatttctaggctttaaccatcgtgcttcacgaatttttctgcattttcttgttattgtcatat 173  Q
    |||||| ||||||||| |  |||  ||||||||||||||||||||||| ||||| |||  || |  | ||| |||||| ||||||||||||||||||||     
T  48054068 gatttccgtctatgcttctgtttcttggggcaggggtaatttctaggccttaactatcaagcctgtcaaatatttctgtattttcttgttattgtcatac 48053969  T
Q  174 ttattgaaatcagggcttctcagggcttctgtcaaagccaagaagttttctgtttgaaatttgaacttttccctttaattttgataaaaggaaggagtct 273  Q
    ||| ||||||  | |||||           |||||||||||||||||| | ||||      |||||| |||| || |||||||||||| |||| ||  ||    
T  48053968 ttactgaaattggagcttca----------gtcaaagccaagaagtttac-gttt------tgaactcttcctttaaattttgataaa-ggaatgaaact 48053887  T
Q  274 cagctgttagctgaaataacctcaatgtattttacgcattggatctcttctttccttacagtaaaaatttgaattcatcaaagagaatgaaaacttacaa 373  Q
    | | |||||| || |||||||||| ||||||||| ||| |||||||||  ||| || |||||||||| ||||||||||| |||| ||||||||  |||||    
T  48053886 ctgatgttagttgcaataacctcactgtattttatgcaatggatctctaattttctcacagtaaaaaattgaattcatcgaagacaatgaaaagatacaa 48053787  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 369
Target Start/End: Complemental strand, 48048178 - 48048102
Alignment:
Q  293 cctcaatgtattttacgcattggatctcttctttccttacagtaaaaatttgaattcatcaaagagaatgaaaactt 369  Q
    ||||| |||||| || |||||||||||||||| | | |||||| ||||||||||||||||| ||| |||||||||||    
T  48048178 cctcactgtattctatgcattggatctcttctattcctacagttaaaatttgaattcatcatagataatgaaaactt 48048102  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 48039836 - 48039751
Alignment:
Q  72 tggatttctgtctatgctcccattttctggggcaggggtaatttctaggctttaaccatcgtgcttcacgaatttttctgcatttt 157  Q
    ||||||||||||||||||||||||| || ||  |||||||||||||||   |||||| | ||||||  ||||| |||||| |||||    
T  48039836 tggatttctgtctatgctcccatttccttggtaaggggtaatttctagtacttaacccttgtgcttgccgaatatttctgtatttt 48039751  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 48034427 - 48034372
Alignment:
Q  72 tggatttctgtctatgctcccattttctggggcaggggtaatttctaggctttaac 127  Q
    |||||||||| |||||||||||||  || ||| ||||||||||||||||| |||||    
T  48034427 tggatttctgcctatgctcccattccctcgggaaggggtaatttctaggccttaac 48034372  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 32977179 - 32977121
Alignment:
Q  72 tggatttctgtctatgctcccattttctggggcaggggtaatttctaggctttaaccat 130  Q
    ||||||||||||||||||||||||  || | ||||||||||||||||||| ||||||||    
T  32977179 tggatttctgtctatgctcccattccctcgagcaggggtaatttctaggccttaaccat 32977121  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 32678934 - 32679028
Alignment:
Q  23 tgataaagcaatgcaagcccaaaaatgctgagattggtggtgctacatatggatttctgtctatgctcccattttctggggcaggggtaatttctagg 120  Q
    |||||||||| | |||||||||||||||||||||||  |  | ||| |  |||||||||||||||||||||||| || ||| ||||||||||| ||||    
T  32678934 tgataaagcagttcaagcccaaaaatgctgagattgacgagg-tacct--ggatttctgtctatgctcccatttccttgggaaggggtaatttttagg 32679028  T

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