View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_low_10 (Length: 407)
Name: NF14919_low_10
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 7e-59; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 172 - 332
Target Start/End: Original strand, 48178678 - 48178852
Alignment:
| Q |
172 |
ttccacgatttcgtcttatagaagaaagtgaaatgctaacaaatgtttaagaagtttaaaataaa--------------aattgtgcattcaacacattg |
257 |
Q |
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| T |
48178678 |
ttccgcgatttcgtcttatagaaaaaagtgaaatgctaacaaatgtttaagaagtttaaaataaaaattttatcttaaaaattgtgcattcaacacattg |
48178777 |
T |
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| Q |
258 |
aaataaaaagtaaaattctgttttttctactgttttggggccttaatgtaggtcattttatcatgtattgcttgg |
332 |
Q |
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| T |
48178778 |
aaacaaaaagtaaaattctgttttttctactgttttggggccttaatgtaggtcattttatcatgtattgcttgg |
48178852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 48178510 - 48178585
Alignment:
| Q |
1 |
tcttctttatagtagttcatttcaagactttcaaatcttcttattagttatgatctttagaaaataaaatataaaa |
76 |
Q |
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| T |
48178510 |
tcttctttatagtagttcatttcaagactttcaaatcttcttattagttatgatctttagaaaataaaatataaaa |
48178585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 56128690 - 56128648
Alignment:
| Q |
218 |
ttaagaagtttaaaataaaaattgtgcattcaacacattgaaa |
260 |
Q |
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| T |
56128690 |
ttaaaaagtttaaaatgaaaattgtgcattcaacacattgaaa |
56128648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 263
Target Start/End: Original strand, 30833455 - 30833483
Alignment:
| Q |
235 |
aaaattgtgcattcaacacattgaaataa |
263 |
Q |
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| T |
30833455 |
aaaattgtgcattcaacacattgaaataa |
30833483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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