View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_low_12 (Length: 399)
Name: NF14919_low_12
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 214 - 390
Target Start/End: Original strand, 5809261 - 5809439
Alignment:
| Q |
214 |
acataaacgaatgaaaaattaaatagagattataacagaactagtctataaggctataagatgtgataataagctatcatatgtacctcaccaaaataaa |
313 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5809261 |
acataaaggaatgaaaaattaaatagagattataacagaagtagtctataagcctataagatgtgataataagctatcatatgtacctcaccaaaataaa |
5809360 |
T |
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| Q |
314 |
gaaaatacatagacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgt--aggcgagaattat |
390 |
Q |
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| T |
5809361 |
gaaaatacatagacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgtcgaggcgagaattat |
5809439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 37751339 - 37751443
Alignment:
| Q |
18 |
acctgtaaatcgcagcaaacacttgtagcagtctctgtggagtcaaactcaacaaatccaaacccaatagaaacatttttcccatttttcaaattcttct |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||| |
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| T |
37751339 |
acctgtaaatcattgcaaacacttgtagcagtctctgtggagtcaaactcaacaaatccaaatcccatagaaacatttttcccatttttcaaatgcttct |
37751438 |
T |
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| Q |
118 |
tcttc |
122 |
Q |
| |
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||||| |
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| T |
37751439 |
tcttc |
37751443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 37735835 - 37735936
Alignment:
| Q |
18 |
acctgtaaatcgcagcaaacacttgtagcagtctctgtggagtcaaactcaacaaatccaaacccaatagaaacatttttcccatttttcaaattcttct |
117 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||| |
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| T |
37735835 |
acctgtaaatcgttgcaaacactcgtagcagtctctgtggagtcaaactcaacaaatccaaatcccatagaaacatttttcccatttttcaaatgcttct |
37735934 |
T |
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| Q |
118 |
tc |
119 |
Q |
| |
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|| |
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| T |
37735935 |
tc |
37735936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 38611229 - 38611128
Alignment:
| Q |
18 |
acctgtaaatcgcagcaaacacttgtagcagtctctgtggagtcaaactcaacaaatccaaacccaatagaaacatttttcccatttttcaaattcttct |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||||||| ||||| |
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| T |
38611229 |
acctgtaaatcgttgcaaacacttgtagcagtctctgcagagtcaaactcaacaaatccaaatcccatagaaacatttttcccttttttcaaatgcttct |
38611130 |
T |
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| Q |
118 |
tc |
119 |
Q |
| |
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|| |
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| T |
38611129 |
tc |
38611128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 263
Target Start/End: Original strand, 37754630 - 37754750
Alignment:
| Q |
143 |
atattaggacacaagacttttctccaaacacatattctgaaagacgaaatacgattgaaagttggattgagacataaacgaatgaaaaattaaatagaga |
242 |
Q |
| |
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|||| ||||||||||||| ||| ||| |||||||| ||||||| ||||||| || |||||||| ||||||| |||| ||||||||| || | |||| | |
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| T |
37754630 |
atatcaggacacaagactgttccacaaccacatattatgaaagaagaaatactatcgaaagttgaattgagaaataattgaatgaaaactttattagaaa |
37754729 |
T |
|
| Q |
243 |
ttataacagaactagtctata |
263 |
Q |
| |
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|||||| | |||||| ||||| |
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| T |
37754730 |
ttataataaaactaggctata |
37754750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 263
Target Start/End: Original strand, 37760604 - 37760724
Alignment:
| Q |
143 |
atattaggacacaagacttttctccaaacacatattctgaaagacgaaatacgattgaaagttggattgagacataaacgaatgaaaaattaaatagaga |
242 |
Q |
| |
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|||| ||||||||||||| ||| ||| |||||||| ||||||| ||||||| || |||||||| ||||||| |||| ||||||||| || | |||| | |
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| T |
37760604 |
atatcaggacacaagactgttccacaaccacatattatgaaagaagaaatactatcgaaagttgaattgagaaataattgaatgaaaactttattagaaa |
37760703 |
T |
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| Q |
243 |
ttataacagaactagtctata |
263 |
Q |
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|||||| | |||||| ||||| |
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| T |
37760704 |
ttataataaaactaggctata |
37760724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 143 - 263
Target Start/End: Original strand, 37738773 - 37738892
Alignment:
| Q |
143 |
atattaggacacaagacttttctccaaacacatattctgaaagacgaaatacgattgaaagttggattgagacataaacgaatgaaaaattaaatagaga |
242 |
Q |
| |
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|||||||||||||||||| ||| ||| |||||||| || |||| |||||||| |||||||||| ||| |||||||| ||| |||| || | |||| | |
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| T |
37738773 |
atattaggacacaagactgttccacaaccacatattatggaagaagaaatacg-ttgaaagttgaattaagacataattgaaacaaaactttagtagaaa |
37738871 |
T |
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| Q |
243 |
ttataacagaactagtctata |
263 |
Q |
| |
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|||||||| |||||| ||||| |
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| T |
37738872 |
ttataacaaaactaggctata |
37738892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 38606051 - 38605959
Alignment:
| Q |
171 |
cacatattctgaaagacgaaatacgattgaaagttggattgagacataaacgaatgaaaaattaaatagagattataacagaactagtctata |
263 |
Q |
| |
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|||||||| ||||||| ||||||| ||||||||||| ||| |||||||| ||||||||| || | |||| ||||||| | |||||| ||||| |
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| T |
38606051 |
cacatattatgaaagaagaaatactattgaaagttgaattaagacataattgaatgaaaactttattagaaattataataaaactaggctata |
38605959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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