View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_low_13 (Length: 393)
Name: NF14919_low_13
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 6e-93; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 114 - 369
Target Start/End: Complemental strand, 30130157 - 30129897
Alignment:
| Q |
114 |
tataaataaatacgaatattgttgaaaatgtataattaatactatctgaatattcaaaaatgggaaataatttgagacgaaaatattctaaacatgaccc |
213 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30130157 |
tataaataaatacgaatattgttgaaaacttataattaatactatctgaatattcagaaatgggaaataatttgagacgaaa-tattctaaacatgaccc |
30130059 |
T |
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| Q |
214 |
tgcaatgcagtatgtgaaaaatattcagcatggatgacaaaatgggggttgctgagtttgagatcgatcggtccatattttgaagcaataaagatacagt |
313 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
30130058 |
tgca-----gtatctgaaaaatattcagcatggatgacaaaatgggggttgctgagtttgagattgatcggtccattttttgaagcaataaagatacagt |
30129964 |
T |
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| Q |
314 |
tggaaggtatcccaaatgaggc-----------ggcttagcagaagagagtcacatattatttggaa |
369 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30129963 |
tggaaggcatcccaaatgaggctatagttacaaggcttagcagaagagagtcacatattatttggaa |
30129897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 55 - 229
Target Start/End: Complemental strand, 30055517 - 30055345
Alignment:
| Q |
55 |
ttgtccttattgtaatatgaatttggtggaaggactaattagtgtatgttttgctgagatataaataaatacgaatattgttgaaaatgtataattaata |
154 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||||| |
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| T |
30055517 |
ttgtccttattgtaatatgaatttggtgggaggactaattagtgtatgttt-gctgagaaataaataaatacgaatcttgttgaaaaccgataattaata |
30055419 |
T |
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| Q |
155 |
ctatctgaatattcaaaaatgggaaataatttgagacgaaaatattctaaacatgaccctgcaatgcagtatgtg |
229 |
Q |
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| T |
30055418 |
ctatctcaatattaaaaaatgagaaataatttgagac-aaaatattctaaacatgaccttgcaatgtagtatgtg |
30055345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 46 - 335
Target Start/End: Complemental strand, 30183025 - 30182734
Alignment:
| Q |
46 |
ttgagtaagttgtccttattgtaatatgaatttggtggaaggactaattagtgtatgttttgctgagatataaataaatacgaatattgttgaaaatgta |
145 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| ||||| |||||||| |||||| | |
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| T |
30183025 |
ttgactaaattgtccttattgtaatatgaatttggtggaaggactaattagtgtatgatg-gagaagatataaaaaaataagaatattgatgaaaaactg |
30182927 |
T |
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| Q |
146 |
taattaatactatctgaatattcaaaaatgggaaataatttgagacgaaaatattctaaacatgaccctgcaatgcagtatgtgaa--------aaatat |
237 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||| |||| |||||||||||||||| | | | || |
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| T |
30182926 |
taattaatactatctgaatattaaaaaataggaaataatttgagac-aaaatattctaaacacgaccttgcaatgcagtatgtgtatgataaggacacat |
30182828 |
T |
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| Q |
238 |
tcagcatggatgacaaaatgggggttgctgagtttgagatcgatcggtccatattttgaagcaataaagatacagttggaaggtatcccaaatgaggc |
335 |
Q |
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||||| |||||||||||||||||| ||||||||||| ||||| |||| |||||||||| | ||||| | ||||| |||| ||||||||||||| |
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| T |
30182827 |
tcagcttggatgacaaaatgggggacgctgagtttga----catcggcccattttttgaagcagtgaagatgcggttggcaggtctcccaaatgaggc |
30182734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 30133914 - 30133799
Alignment:
| Q |
20 |
cagttaattaaggtaaagcagttttcttgagtaagttgtccttattgtaatatgaatttggtggaaggactaattagtgtatgttttgctgagatataaa |
119 |
Q |
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||||||||||| ||||||||||||| |||| ||||||||||||| ||||||||||||||| ||||||||| |||||||||||| |||| ||||||||||| |
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| T |
30133914 |
cagttaattaaagtaaagcagtttttttgactaagttgtccttaatgtaatatgaatttgatggaaggacaaattagtgtatg-tttgttgagatataaa |
30133816 |
T |
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| Q |
120 |
taaatacgaatattgtt |
136 |
Q |
| |
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| T |
30133815 |
taaatacgaatattgtt |
30133799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 30135310 - 30135195
Alignment:
| Q |
20 |
cagttaattaaggtaaagcagttttcttgagtaagttgtccttattgtaatatgaatttggtggaaggactaattagtgtatgttttgctgagatataaa |
119 |
Q |
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||||||||||| ||||||||||||| |||| ||||||||||||| ||||||||||||||| ||||||||| |||||||||||| |||| ||||||||||| |
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| T |
30135310 |
cagttaattaaagtaaagcagtttttttgactaagttgtccttaatgtaatatgaatttgatggaaggacaaattagtgtatg-tttgttgagatataaa |
30135212 |
T |
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| Q |
120 |
taaatacgaatattgtt |
136 |
Q |
| |
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||||||||||||||||| |
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| T |
30135211 |
taaatacgaatattgtt |
30135195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 30144861 - 30144746
Alignment:
| Q |
20 |
cagttaattaaggtaaagcagttttcttgagtaagttgtccttattgtaatatgaatttggtggaaggactaattagtgtatgttttgctgagatataaa |
119 |
Q |
| |
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||||||||||| ||||||||||||| |||| ||||||||||||| ||||||||||||||| ||||||||| |||||||||||| |||| ||||||||||| |
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| T |
30144861 |
cagttaattaaagtaaagcagtttttttgactaagttgtccttaatgtaatatgaatttgatggaaggacaaattagtgtatg-tttgttgagatataaa |
30144763 |
T |
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| Q |
120 |
taaatacgaatattgtt |
136 |
Q |
| |
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||||||||||||||||| |
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| T |
30144762 |
taaatacgaatattgtt |
30144746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 30130575 - 30130505
Alignment:
| Q |
51 |
taagttgtccttattgtaatatgaatttggtggaaggactaattagtgtatgttttgctgagatataaataa |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30130575 |
taagttgtccttattgtaatatgaatttggtggaaggactaattagtgtat-atttgctgagatataaataa |
30130505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 337 - 393
Target Start/End: Complemental strand, 30182698 - 30182644
Alignment:
| Q |
337 |
gcttagcagaagagagtcacatattatttggaaagatggtaaaattttccaaaacat |
393 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
30182698 |
gcttagcagaagagagtcacat--tgtttggaaagatggtaaaattttccaaaacat |
30182644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 393
Target Start/End: Complemental strand, 30055199 - 30055145
Alignment:
| Q |
337 |
gcttagcagaagagagtcacatattatttggaaagatggtaaaattttccaaaacat |
393 |
Q |
| |
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||||||||||||||||| |||| | ||| ||||||||||||||||||||||||||| |
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| T |
30055199 |
gcttagcagaagagagttacat--tgtttagaaagatggtaaaattttccaaaacat |
30055145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 393
Target Start/End: Complemental strand, 30129150 - 30129118
Alignment:
| Q |
361 |
tatttggaaagatggtaaaattttccaaaacat |
393 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
30129150 |
tatttgaaaagatggtaaaattttccaaaacat |
30129118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 332
Target Start/End: Complemental strand, 2829490 - 2829402
Alignment:
| Q |
240 |
agcatggatgacaaaatgggggttgctgagtttgagatcgatcggtccatattttgaagcaataaagatacagttggaaggtatcccaaatga |
332 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| ||| |||||| | | |||||| ||||||| | |||| ||||| |||||||||| |
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| T |
2829490 |
agcatggatgacaaaatgggggatgctgagtttga----catcagtccatttgtggaagcagtaaagatgcggttgcaaggtctcccaaatga |
2829402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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