View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_low_17 (Length: 365)
Name: NF14919_low_17
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_17 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 39813872 - 39813525
Alignment:
| Q |
18 |
ctagtggctggactcttccaatctgacctttctcctttacagcttataattgttgttattttcaacatacagattagaacttggacattttggaattgat |
117 |
Q |
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| T |
39813872 |
ctagtgtctggactcttccaatctgacctttctcctttacagcttataattgttgttattttcaacatacagattagaacttggacattttggaattgat |
39813773 |
T |
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| Q |
118 |
gttgtgaatgttgtccctggagctgtgaagtcaaatatgggaaattccggcatagccatctacgaccgcatgccagagtggaaattgttcaaaccatttg |
217 |
Q |
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| T |
39813772 |
gttgtgaatgttgtccctggagctgtgaagtcaaatatgggaaattccggcatagccatctacgaccgcatgccagagtggaaattgttcaaaccatttg |
39813673 |
T |
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| Q |
218 |
aagcagtaatccgagagagagctctactgtctcggaagttaagacaaacccctacagacgagtttgctaaacacaccatagctgctatcctaaggaagaa |
317 |
Q |
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| T |
39813672 |
aagcagtaatccgagagagagctctactgtctcggaagttaagacaaacccctacagacgagtttgctaaacacaccatagctgctatcctaaggaagaa |
39813573 |
T |
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| Q |
318 |
accacctgcatggttctcttatggcaattattctactgtcatggctat |
365 |
Q |
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| T |
39813572 |
accacctgcatggttctcttatggcaattattctactgtcatggctat |
39813525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 67 - 363
Target Start/End: Complemental strand, 39816701 - 39816405
Alignment:
| Q |
67 |
ttgttgttattttcaacatacagattagaacttggacattttggaattgatgttgtgaatgttgtccctggagctgtgaagtcaaatatgggaaattccg |
166 |
Q |
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| T |
39816701 |
ttgttgttattttcaacaaacagattggaacttggacattttggaattgatgttgtgaatgttgtccctggagctgtgaagtcaaatattggaaattccg |
39816602 |
T |
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| Q |
167 |
gcatagccatctacgaccgcatgccagagtggaaattgttcaaaccatttgaagcagtaatccgagagagagctctactgtctcggaagttaagacaaac |
266 |
Q |
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| T |
39816601 |
gcatagctatctacaaccgcatgccggagtggaaactattcaaaccatttgaagcagcaatccgagagagagctctattgtctcaggggttaagatcaac |
39816502 |
T |
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| Q |
267 |
ccctacagacgagtttgctaaacacaccatagctgctatcctaaggaagaaaccacctgcatggttctcttatggcaattattctactgtcatggct |
363 |
Q |
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| T |
39816501 |
ccctacagatgagtttgctagacacaccgtagctgctgtccttaggaagaaaccacctgcatggttctcatatggccgttattctactgccatggct |
39816405 |
T |
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