View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_low_18 (Length: 356)
Name: NF14919_low_18
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 354
Target Start/End: Complemental strand, 2335754 - 2335416
Alignment:
| Q |
14 |
ataatactagtttggttttgcctgatgatgctaaggttgatgaaattaaggctgagttgaaggatggtgtcctaattgttactattcctaggagtgaaaa |
113 |
Q |
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| T |
2335754 |
ataatactagtttggttttgcctgatgatgctaaggttgatgaaattaaggctgagttgaaggatggtgtcctaattgttactattcctagaagtgaaaa |
2335655 |
T |
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| Q |
114 |
gcctaaaaaagatgttaagcaagtgaatgtagagtga---taggattgattctataagagtgtggtgaacttgtaaacttgagatggatttgtgaagttt |
210 |
Q |
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| T |
2335654 |
gcctagaaaagatgttaagcaagtgaatgtagagtgatattaggattgattctataagagtgtggtgaagttgtgaactt-agatggatttgtgaagttt |
2335556 |
T |
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| Q |
211 |
gtgacttgtgaacctatgacattaataacttttgtgtgtgtgtatctttgaatttcatagtgaatcaaataatgnnnnnnnacctatgttgttatatatg |
310 |
Q |
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| T |
2335555 |
gtgacttgtgaacctatggcattaatgacttgtgtgtatgtgtatctttgaatttcatagagaatcaaataaag-tttcttaccta---tgctatatatg |
2335460 |
T |
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| Q |
311 |
aataaattgtatcataaatgttattattatgtgatttacataaa |
354 |
Q |
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| T |
2335459 |
aataaattgtatcaaaaatggtattattttgtaatttacataaa |
2335416 |
T |
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