View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_low_2 (Length: 633)
Name: NF14919_low_2
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 222 - 621
Target Start/End: Complemental strand, 22198923 - 22198524
Alignment:
| Q |
222 |
gcataatctttttctcctcattaataattccttgattactaatagttaagcgtttatgagtgacgcgcttggatttattttatctgacagcagaactatc |
321 |
Q |
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| T |
22198923 |
gcataatctttttctcctcattagtaattccttgattactaatagttaagcgtttatgagtgacgtgcttggatttattttatctgacagcagaactatc |
22198824 |
T |
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| Q |
322 |
tctttcaacactcacttcattcaacatccatcaaagtatacccactcctcacttccctgcatttaaagtttaaacatttcattattagcttat-ttttaa |
420 |
Q |
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| T |
22198823 |
tctttcaacactcacttcattcaacatccatcaaagtatacccactcctcacttccctgcatttaaagtttaaacatttcattattagcttattttttaa |
22198724 |
T |
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| Q |
421 |
agacaaaaccattatttaacaccctacttaatgcactgtttccatacactataatatttttcttttaattcgagtatactcagcaatgaaaccgtgtact |
520 |
Q |
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| T |
22198723 |
agacaaaaccattatttaacaccctacttaatgcactgtttccatacactatagtatttttcttttaattcgagtatactcagc-atgaaactgtgtact |
22198625 |
T |
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| Q |
521 |
aattcgttgagtcaaataagacaacaatgtacgacaaaactcttcctcaaaagttttaaaaatactgcgttggaacctaaaacttttgattaagttaaaa |
620 |
Q |
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| T |
22198624 |
aattcgttgagtcgaataagacaacaatgtacgacaaaactcttcctcaaaagttttaaaaatactgcgttgaaatctaaattttttgattaagttaaaa |
22198525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 5 - 188
Target Start/End: Complemental strand, 22199140 - 22198957
Alignment:
| Q |
5 |
gtaccgcacacgacaatgacacatagacattgataaattttgagcaaatgaaatcattcagattagtataattataagtatcagtgttgaatacgtaacc |
104 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||| || ||||||||||||||| ||||||||||||| |||||||||| |||||||| ||| |
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| T |
22199140 |
gtaccgtacacgacaatgacacatatacattgataaattttaagaaaatgaaatcattcaaattagtataattacaagtatcagtattgaatacttaa-- |
22199043 |
T |
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| Q |
105 |
acacctttaatcagaagtatcagcgcaacagaggttggttggggatgcatgtgatat-ggtcctt--tatgtgtggcatcagaaatc |
188 |
Q |
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| T |
22199042 |
acacctttgatcagaagtatc-gcacaagagaggttggttgggtatgcatgtgatatgggtcctttatatgtgtggcatcagaaatc |
22198957 |
T |
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