View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_low_23 (Length: 316)
Name: NF14919_low_23
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 6897435 - 6897138
Alignment:
| Q |
1 |
caactaaaaattaccatagccatcatgatttttctttaaaatttaaaacaaaaaagagtttgtgcatgtgagtttaaaaatttgcaatacaaaactgtat |
100 |
Q |
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| T |
6897435 |
caactaaaaattaccatagccaacatgatttttctttaaaatttaaaacaaaaaagagtttgtgcatgtgagtttaaaaatttgcaatacaaaactgtat |
6897336 |
T |
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| Q |
101 |
acaacatcctcattgtacaccagcctaannnnnnnaaacttcaaccatcataatgacaacgttgcttctaacttgttatgaaggacctgaagggaaacca |
200 |
Q |
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| T |
6897335 |
acaacatcctcattgtacaccagcctaatttttttaaacttcaaacatcataatgacaacgttgcttctaacttgttatgaaggacctgaagggaaacca |
6897236 |
T |
|
| Q |
201 |
tgcaccatgataatcagaagtttgcattggacacttccccatttttggatttggggagtaccatttttcatgttctactcaacaagatctgcacagtt |
298 |
Q |
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| T |
6897235 |
tgcaccatgatagtcagaagattgcattggatacttccccatttttggatttggggagtaccatttttcatgttctactcaacaagatctgcacagtt |
6897138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 141 - 298
Target Start/End: Original strand, 19055842 - 19055999
Alignment:
| Q |
141 |
tcaaccatcataatgacaacgttgcttctaacttgttatgaaggacctgaagggaaaccatgcaccatgataatcagaagtttgcattggacacttcccc |
240 |
Q |
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|||| |||||||||||||| |||||||| ||||||| |||||||||| |||||| |||||||||| ||||| || || |||||||||||||||||||| | |
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| T |
19055842 |
tcaaacatcataatgacaatgttgcttcaaacttgtaatgaaggaccagaagggcaaccatgcacaatgatcataaggagtttgcattggacacttccac |
19055941 |
T |
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| Q |
241 |
atttttggatttggggagtaccatttttcatgttctactcaacaagatctgcacagtt |
298 |
Q |
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| T |
19055942 |
attataggatgtggggaataccatttttcatgttctatgcaacaagatctgcacagtt |
19055999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 146 - 298
Target Start/End: Complemental strand, 19189352 - 19189200
Alignment:
| Q |
146 |
catcataatgacaacgttgcttctaacttgttatgaaggacctgaagggaaaccatgcaccatgataatcagaagtttgcattggacacttccccatttt |
245 |
Q |
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|||||||||||||| |||||||| ||||||| |||||||||| |||||| |||||||||| ||| | || || |||||||||||||||||||| |||| | |
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| T |
19189352 |
catcataatgacaatgttgcttcaaacttgtaatgaaggaccagaagggcaaccatgcacaatggtcataaggagtttgcattggacacttccacattat |
19189253 |
T |
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| Q |
246 |
tggatttggggagtaccatttttcatgttctactcaacaagatctgcacagtt |
298 |
Q |
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| T |
19189252 |
aggatgtggggaataccatttttcatgttctatgcaacaagatctgcacagtt |
19189200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 179 - 288
Target Start/End: Complemental strand, 51729565 - 51729456
Alignment:
| Q |
179 |
tgaaggacctgaagggaaaccatgcaccatgataatcagaagtttgcattggacacttccccatttttggatttggggagtaccatttttcatgttctac |
278 |
Q |
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||||||| |||||| ||||||||||||||| | || || | ||||||||||||| |||| |||| |||||| ||||| | ||||||||| ||||||| |
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| T |
51729565 |
tgaaggaattgaaggaaaaccatgcaccatgttgataaggactttgcattggacagttccacattattggatatggggtttgccatttttcttgttctat |
51729466 |
T |
|
| Q |
279 |
tcaacaagat |
288 |
Q |
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|||||||||| |
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| T |
51729465 |
tcaacaagat |
51729456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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