View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_low_25 (Length: 308)
Name: NF14919_low_25
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 34974323 - 34974590
Alignment:
| Q |
14 |
aaaaacttcaccacctatgaacattaagatggtaatgatgattaattgagggttagaaaaaatttgcatttcaaccgtggacatgcttgaaactgtggtg |
113 |
Q |
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| T |
34974323 |
aaaaacttcaccacctatgaacattaagatggtaatgatgattaattgagggttagaaaaattttgcatttcaaccgtggacatgcttgaaactgtggtg |
34974422 |
T |
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| Q |
114 |
gctgaaacggatgtgaagaacaaatctaaatttttaggtgtttcacctaaaggttttagaactttgagaaatccaaaacccaaagttgaaagagatgtga |
213 |
Q |
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| T |
34974423 |
gctgaaatggatgtgaagaacaaatctaaatttttaggtgtttcacctaaaggttttagaactttgagaaatccaaaacccaaagttgaaagagatgtga |
34974522 |
T |
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| Q |
214 |
aatatacaatttgaacccataacgggtttgctcttaggaggatgaagcgacaaaaacatgctgctaag |
281 |
Q |
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| T |
34974523 |
aatatacaatttgaacccataatgggtttgctcttaggaggatgaagcgacaaaaacatgctgctaag |
34974590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 34955865 - 34956125
Alignment:
| Q |
18 |
acttcaccacctatgaacattaagatggtaatgatgattaattgagggttagaaaaaatttgcatttcaaccgtggacatgcttgaaactgtggtggctg |
117 |
Q |
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| T |
34955865 |
acttcaccacctatgaacattaagatggtaatgatgattaattgagtgttagaaaaaattcccatttcaaccgtgaccatgcttgaaactgtggtggatg |
34955964 |
T |
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| Q |
118 |
aaacggatgtgaagaacaaatctaaatttttaggtgtttcacctaaaggttttagaactttgagaaatccaaaacccaaagttgaaagagatgtgaaata |
217 |
Q |
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| T |
34955965 |
aaacggatgtgaagaacaaatctaaatttttttgtgtttgacctaagggttttagagctttgagaaatccaaaacccaaagttgaaatggatatgaaata |
34956064 |
T |
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| Q |
218 |
tacaatttgaacccataacgggtttgctcttaggaggatgaagcgacaaaaacatgctgct |
278 |
Q |
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| T |
34956065 |
tacaatttgaacacatagtgggtttgatcttaggaggatgaatcgatataaacatgctgct |
34956125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 35035053 - 35035308
Alignment:
| Q |
20 |
ttcaccacctatgaacattaagatggtaatgatgattaattgagggttagaaaaaatttgcatttcaaccgtggacatgcttgaaactgtggtggctgaa |
119 |
Q |
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| T |
35035053 |
ttcaccacctatgaacattaagatggtaatgatgattaattgagggttagaaaaaaattccatttcaaccgtggacatgcttgaaactgtggtggatgaa |
35035152 |
T |
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| Q |
120 |
acggatgtgaagaacaaatctaaatttttaggtg---tttcacctaaaggttttagaactttgagaaatccaaaacccaaagttgaaagagatgtgaaat |
216 |
Q |
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| T |
35035153 |
acggatgtgaagaacaaatctaagtttttaggtgatgtttgatataaagggtttagagctttgagaaatccaaacccaaaaaaggaaatagagatgaaat |
35035252 |
T |
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| Q |
217 |
atacaatttgaacccataacgggtttgctcttaggaggatgaagcgacaaaaacat |
272 |
Q |
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||| ||||||||| ||||| || |||||||||||||||||||||||| |||||||| |
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| T |
35035253 |
atagaatttgaacacataatggatttgctcttaggaggatgaagcgataaaaacat |
35035308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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