View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_low_29 (Length: 281)
Name: NF14919_low_29
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 11316339 - 11316455
Alignment:
| Q |
100 |
tctatatgttttttaaattcatgccaaatacgattaaaagaggatttggtgtgcca---nnnnnnnngttcttcatccttaaatctgcccttctttgtca |
196 |
Q |
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| T |
11316339 |
tctatatgttttttaaattcatgccaaatacaattaaaagagaatctcgagtgccattttcttttttgttcttcatccttaaatctg-tcttctttgtca |
11316437 |
T |
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| Q |
197 |
tcctctcattcttcttca |
214 |
Q |
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||||| |||||||||||| |
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| T |
11316438 |
tcctcccattcttcttca |
11316455 |
T |
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