View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14919_low_35 (Length: 250)

Name: NF14919_low_35
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14919_low_35
NF14919_low_35
[»] chr1 (3 HSPs)
chr1 (43-250)||(33158742-33158951)
chr1 (43-250)||(33181585-33181794)
chr1 (109-250)||(33140395-33140536)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 8e-73; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 43 - 250
Target Start/End: Complemental strand, 33158951 - 33158742
Alignment:
Q  43 attagtacatgttaattagattcataagaaaaatcataatatat--gagttttgaacataataaaaggttttataagatttatgaccaaccaaacactta 140  Q
    ||||||||||| |||||| |||||||| ||  ||||| |||| |  ||||||| |   |||||| || |||||||| ||||| |||||||||||||||||    
T  33158951 attagtacatggtaattaaattcataaaaattatcatgatatgtaagagttttcattgtaataagagattttataaaatttacgaccaaccaaacactta 33158852  T
Q  141 cccacttaatctttatatcaatgccaaccagcacggaatcaacccacattagttcttgggtcattgattcttctttggttttggtgaaagggaatccctt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33158851 cccacttaatctttatatcaatgccaaccagcacggaatcaacccacattagttcttgggtcattgattcttctttggttttggtgaaagggaatccctt 33158752  T
Q  241 tactccccaa 250  Q
    ||||||||||    
T  33158751 tactccccaa 33158742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 43 - 250
Target Start/End: Complemental strand, 33181794 - 33181585
Alignment:
Q  43 attagtacatgttaattagattcataagaaaaatcataatatat--gagttttgaacataataaaaggttttataagatttatgaccaaccaaacactta 140  Q
    ||||||||||| |||||| |||||||| ||  ||||| |||| |  ||||||| |   |||||| || |||||||| ||||| |||||||||||||||||    
T  33181794 attagtacatggtaattaaattcataaaaattatcatgatatgtaagagttttcattgtaataagagattttataaaatttacgaccaaccaaacactta 33181695  T
Q  141 cccacttaatctttatatcaatgccaaccagcacggaatcaacccacattagttcttgggtcattgattcttctttggttttggtgaaagggaatccctt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33181694 cccacttaatctttatatcaatgccaaccagcacggaatcaacccacattagttcttgggtcattgattcttctttggttttggtgaaagggaatccctt 33181595  T
Q  241 tactccccaa 250  Q
    ||||||||||    
T  33181594 tactccccaa 33181585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 109 - 250
Target Start/End: Complemental strand, 33140536 - 33140395
Alignment:
Q  109 ttttataagatttatgaccaaccaaacacttacccacttaatctttatatcaatgccaaccagcacggaatcaacccacattagttcttgggtcattgat 208  Q
    |||| |||||||||||| || | ||| || |||||| |||||||||||||||||| || |||||| ||||||||||||||||| ||||||||||||||||    
T  33140536 ttttttaagatttatgatcagcgaaatacgtacccatttaatctttatatcaatgtcagccagcagggaatcaacccacattaattcttgggtcattgat 33140437  T
Q  209 tcttctttggttttggtgaaagggaatccctttactccccaa 250  Q
    |||||||||| ||||| | ||||||| |||||||||||||||    
T  33140436 tcttctttggatttggagtaagggaagccctttactccccaa 33140395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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