View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_low_37 (Length: 242)
Name: NF14919_low_37
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 29 - 225
Target Start/End: Original strand, 16437655 - 16437852
Alignment:
| Q |
29 |
taaattggtttgtgatggacttcgtttgaaagaagagcatgggttgatgagtggtgaagtgctccagagaataaaagattgcatgttggaagggtatagg |
128 |
Q |
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| T |
16437655 |
taaattggtttgtgatggacttcgtttgaaagaagaggatgggttgatgagtggtgaagtgcaccagagaataaaatattgcatgttggaagggtatagg |
16437754 |
T |
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| Q |
129 |
taaatcatgaaagttatacaagttacgacttgcatcggtcggtat-ctgagtttgaagtacttatttgaccaaaaggagttatgcatgaggcaaacaa |
225 |
Q |
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| T |
16437755 |
taaatcatgaaagttatacaagttacgacttgcatcggtcggtatcctgagtttaaagtacttatttgaccaaaaggagttatgcatgaggcaaacaa |
16437852 |
T |
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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 222
Target Start/End: Original strand, 49928938 - 49929125
Alignment:
| Q |
33 |
ttggtttgtgatggacttcgtttgaaagaagagcatgggttgatgagtggtgaagtgctccagagaataaaagattgcatgttggaagggtataggtaaa |
132 |
Q |
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| T |
49928938 |
ttggtttgtgatggacttcgtttgaaaggagaagatgagttgctgagtggtgaagtgcaccggaggataaaatgtggcatattggaaaggtacaagcgaa |
49929037 |
T |
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| Q |
133 |
tcatgaaagttatacaagttacgacttgcatcggtcggtat-ctgagtttgaagtacttatttgaccaaaaggagttatgcatgaggcaaa |
222 |
Q |
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| T |
49929038 |
ccatgaaagttaaaccggttatgactcgcaaag---ggtatcctgagttggaagtacttgtttgaccaaaatgagttaaacacgaggcaaa |
49929125 |
T |
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