View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14919_low_38 (Length: 240)
Name: NF14919_low_38
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 53608939 - 53608718
Alignment:
| Q |
1 |
ttttcaacttatccatatgcttatattcatttattctttatttaaaatcatgagttcatgactcttaaataacctgattgattggcaaaaccatatttag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
53608939 |
ttttcaacttatccatatgcttatattcatttattctttatttaaaatcatgagttcatgactcttaaatagcctgattgattggcaaaaccatatttag |
53608840 |
T |
|
| Q |
101 |
agttaactagttagttcaactaagctaatggatagagattggacaatttacatcttgataataacaaattgagagcttagaatctcaactgtttgatctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53608839 |
agttaactagttagttcaactaagctaatggatagagattggacaatttacatcttgataataacaaattgagagcttagaatctcaactgtttgatctt |
53608740 |
T |
|
| Q |
201 |
aatcaaatgacaaaatagtagt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
53608739 |
aatcaaatgacaaaatagtagt |
53608718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 37223183 - 37223129
Alignment:
| Q |
88 |
aaaccatatttagagttaactagttagttcaactaagctaatggatagagattgg |
142 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| |||| |||||||||||||||||| |
|
|
| T |
37223183 |
aaaccatttttagagttaactggttagttcatctaacctaatggatagagattgg |
37223129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 37210094 - 37210011
Alignment:
| Q |
120 |
ctaagctaatggatagagattggacaatttacatcttgataataacaaattgagagcttagaatctcaactgtttgatcttaat |
203 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||||| ||||||||| || | || ||||||| ||| || |||||||||| |
|
|
| T |
37210094 |
ctaagctgatggatagagattggacggttcacatcttgattataacaaatcgaaaactcagaatcttaaccgtatgatcttaat |
37210011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University