View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_low_42 (Length: 234)
Name: NF14919_low_42
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33158704 - 33158484
Alignment:
| Q |
1 |
ttccttgtgtactcaacacaacaaccaaaggattcagcttgaaatgcaactcctcctttatgaacctgatgccttttatggttgcaaagtgatgtaacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33158704 |
ttccttgtgtactcaacacaacaaccaaaggattcagcttgaaatgcaactcctcctttatgaacctgatgccttttatggttgcaaagtgatgtaacac |
33158605 |
T |
|
| Q |
101 |
ataccatggcattttagacttcaaggaatcaaacttcttcctccccctatcattccattcctccacaataggaatccacacaatctggtgttggcttcct |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33158604 |
ataccatggcatcttagacttcaaggaatcaaacttcttcctccccctatcattccattcctccacaataggaatccacacaatctggtgttggcttcct |
33158505 |
T |
|
| Q |
201 |
gttttctggatatgatcataa |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
33158504 |
gttttctggatatgatcataa |
33158484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33181547 - 33181327
Alignment:
| Q |
1 |
ttccttgtgtactcaacacaacaaccaaaggattcagcttgaaatgcaactcctcctttatgaacctgatgccttttatggttgcaaagtgatgtaacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33181547 |
ttccttgtgtactcaacacaacaaccaaaggattcagcttgaaatgcaactcctcctttatgaacctgatgccttttatggttgcaaagtgatgtaacac |
33181448 |
T |
|
| Q |
101 |
ataccatggcattttagacttcaaggaatcaaacttcttcctccccctatcattccattcctccacaataggaatccacacaatctggtgttggcttcct |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33181447 |
ataccatggcatcttagacttcaaggaatcaaacttcttcctccccctatcattccattcctccacaataggaatccacacaatctggtgttggcttcct |
33181348 |
T |
|
| Q |
201 |
gttttctggatatgatcataa |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
33181347 |
gttttctggatatgatcataa |
33181327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33140357 - 33140137
Alignment:
| Q |
1 |
ttccttgtgtactcaacacaacaaccaaaggattcagcttgaaatgcaactcctcctttatgaacctgatgccttttatggttgcaaagtgatgtaacac |
100 |
Q |
| |
|
||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||| || |||||||||| || | |||||||||||| || || |
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| T |
33140357 |
ttccttgtgggctcaacacaacaaataaaggcttctgcttgaaatgcaactcctcctttatgtacttgatgcctttaattggtgcaaagtgatgcaaaac |
33140258 |
T |
|
| Q |
101 |
ataccatggcattttagacttcaaggaatcaaacttcttcctccccctatcattccattcctccacaataggaatccacacaatctggtgttggcttcct |
200 |
Q |
| |
|
|||||| ||||| || |||||||| |||||||| || ||| || | |||||||||||||||||||||| |||| ||||||||||| |||||||||||| |
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| T |
33140257 |
ataccaaggcatctttgacttcaaagaatcaaattttttcttcaacttatcattccattcctccacaatgggaacccacacaatcttgtgttggcttcca |
33140158 |
T |
|
| Q |
201 |
gttttctggatatgatcataa |
221 |
Q |
| |
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||||||| |||||||||||| |
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| T |
33140157 |
gttttctttatatgatcataa |
33140137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 33287945 - 33288148
Alignment:
| Q |
1 |
ttccttgtgtactcaacacaacaaccaaaggattcagcttgaaatgcaactcctcctttatgaacctgatgccttttatggttgcaaagtgatgtaacac |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||| | |||||||||||||||||||||||| || |||||||||| || | |||||||||||| || || |
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| T |
33287945 |
ttccttgtgggctcaacacaacaaccaaaggcttctgattgaaatgcaactcctcctttatgtacttgatgcctttaattggtgcaaagtgatgcaaaac |
33288044 |
T |
|
| Q |
101 |
ataccatggcattttagacttcaaggaatcaaacttcttcctccccctatcattccattcctccacaataggaatccacacaatctggtgttggcttcct |
200 |
Q |
| |
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|||||| ||||| || |||||||| |||||||| || |||||| | ||||| ||||||| ||||||| |||||||||||||||| || ||||||||| |
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| T |
33288045 |
ataccaaggcatctttgacttcaaagaatcaaattttttcctcaacttatcagtccattcatccacaacgggaatccacacaatcttgtactggcttcct |
33288144 |
T |
|
| Q |
201 |
gttt |
204 |
Q |
| |
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|||| |
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|
| T |
33288145 |
gttt |
33288148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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