View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_low_43 (Length: 234)
Name: NF14919_low_43
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 32809552 - 32809350
Alignment:
| Q |
17 |
agtttctacccggtcatgcttcaattggccttatactgtatctggatggaggtcaaggtcacgtagttaaaggttttgttgttggaactcttgttgtagt |
116 |
Q |
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| T |
32809552 |
agtttctactcggtcatgcttcgattggccttatagtgtacctggatggaggtcaaggtcacgtagttaaaggttttgttgttggaactcttgttgtagt |
32809453 |
T |
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| Q |
117 |
aggacttgttatgcttatcgcagctacttttactaatgcaacttatcagagacttcgacttgataacaatgataatgataataatgaaagacctagttct |
216 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32809452 |
aggactttttatgcttattgcagctacttttactaatgcaacttatcagagacttcgacttgataacaatgataatgataataatgaaaaacctagttct |
32809353 |
T |
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| Q |
217 |
gtg |
219 |
Q |
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||| |
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| T |
32809352 |
gtg |
32809350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 217
Target Start/End: Complemental strand, 32802971 - 32802790
Alignment:
| Q |
36 |
ttcaattggccttatactgtatctggatggaggtcaaggtcacgtagttaaaggttttgttgttggaactcttgttgtagtaggacttgttatgcttatc |
135 |
Q |
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||||| ||| |||| | |||| |||| ||||||||| || || || ||| ||||| |||||||||||||||||||| ||| |||| |||||||||||| |
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| T |
32802971 |
ttcaactggtcttacagtgtacctggctggaggtcagggccaggttgttggaggttgtgttgttggaactcttgttgcagttggacctgttatgcttatt |
32802872 |
T |
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| Q |
136 |
gcagctacttttactaatgcaacttatcagagacttcgacttgataacaatgataatgataataatgaaagacctagttctg |
217 |
Q |
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| T |
32802871 |
gccgctacttttactaatgctacttatgagagacttccacttgatgacgatgataatgataataatgaagggcctaattctg |
32802790 |
T |
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