View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_low_46 (Length: 222)
Name: NF14919_low_46
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 15928776 - 15928584
Alignment:
| Q |
13 |
attatacttattttaaagtttatacttattgatgtaacatttatgattttgaaattggagaaaatcaaaccaacaccatatgaccaacctaggtaggttt |
112 |
Q |
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| T |
15928776 |
attatacttattttaaagtttatacttattgatgtaacatttatgattttgaaattggagaaaatcaaaccaacaccatatgaccaacctaggtaggttt |
15928677 |
T |
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| Q |
113 |
gacaattattaatcttcgaattaaccattcccttagaaaatggttagaataggaaagaaacatacgaggatgtttcctttgatacttgcgtaa |
205 |
Q |
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| T |
15928676 |
gacaattattaatcttcgaattaaccattcccttagaaaatggttagaataggaaagaatcatacgaggatgtttcctttgatacttgcgtaa |
15928584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 15928515 - 15928474
Alignment:
| Q |
164 |
ggaaagaaacatacgaggatgtttcctttgatacttgcgtaa |
205 |
Q |
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| T |
15928515 |
ggaaagaaacatacgaggatgtttcctttaatacttgtgtaa |
15928474 |
T |
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