View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_low_47 (Length: 219)
Name: NF14919_low_47
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 41327172 - 41327306
Alignment:
| Q |
15 |
catagggagagtcgggttctgaaggagattcgatagagatgcagaagcggcgtttggtgttgaaagggtgcaagagagaagagagacccgaaaggggatg |
114 |
Q |
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| T |
41327172 |
catagggagagtcgggttctgaaggagattcgatggagaggtagaagcggcgtttggtgttgaaagggtgcaagagagaagagagaccggaaaggggatg |
41327271 |
T |
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| Q |
115 |
aaggctaagttaataaaaatgtgaaatgggattgt |
149 |
Q |
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| T |
41327272 |
aaggcaaagttaataaaaatgtgaaatgggattgt |
41327306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 42313526 - 42313658
Alignment:
| Q |
15 |
catagggagagtcgggttctgaaggagattcgatagagatgcagaagcggcgtttggtgttgaaagggtgcaagagagaagagagacccgaaaggggatg |
114 |
Q |
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|||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42313526 |
catagggagagtcgggttctgaaggagatttgatggag--gcagaagcggcgtttggtgttgaaagggtgcaagagagaagagagaccggaaaggggatg |
42313623 |
T |
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| Q |
115 |
aaggctaagttaataaaaatgtgaaatgggattgt |
149 |
Q |
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| T |
42313624 |
aaggctaagttaataaaaatgtgaaatgggattgt |
42313658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 20910280 - 20910413
Alignment:
| Q |
15 |
catagggagagtcgggttctgaaggagattcgatagagatgcagaagcggcgtttggtgttgaaagggtgcaagagagaagagagacccgaaaggggatg |
114 |
Q |
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|||||||||||||||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
20910280 |
catagggagagtcgggttctgaaggagattcgatggagaggtagaa-cggcgtttggtgttgaaagggtgcaagagagaagagagaccggaaaagggatg |
20910378 |
T |
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| Q |
115 |
aaggctaagttaataaaaatgtgaaatgggattgt |
149 |
Q |
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|||| ||| ||||||||||||||||||||||||| |
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| T |
20910379 |
aaggaaaagataataaaaatgtgaaatgggattgt |
20910413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 20924728 - 20924861
Alignment:
| Q |
15 |
catagggagagtcgggttctgaaggagattcgatagagatgcagaagcggcgtttggtgttgaaagggtgcaagagagaagagagacccgaaaggggatg |
114 |
Q |
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|||||||||||||||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
20924728 |
catagggagagtcgggttctgaaggagattcgatggagaggtagaa-cggcgtttggtgttgaaagggtgcaagagagaagagagaccggaaaagggatg |
20924826 |
T |
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| Q |
115 |
aaggctaagttaataaaaatgtgaaatgggattgt |
149 |
Q |
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|||| ||| ||||||||||||||||||||||||| |
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| T |
20924827 |
aaggaaaagataataaaaatgtgaaatgggattgt |
20924861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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