View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_low_48 (Length: 213)
Name: NF14919_low_48
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 45623679 - 45623496
Alignment:
| Q |
17 |
aatatggtggaggaaattggttagaagttacggtaataatgtctgtttggcaagttttataatgaaatagggattttgcaatattcagtttaagttgaat |
116 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45623679 |
aatatggtggaggaaattggttagaagttatggtaataatgtctgtttggcaagttttataatgaaatagggattta-caatattcagtttaagttgaat |
45623581 |
T |
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| Q |
117 |
tgcagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatga |
201 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45623580 |
tgcatctttaacagtggtagtctactagctttggtggtgtatgctatgatacaatttaaactcaaaggatcacaagttttgatga |
45623496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 7e-48; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 89 - 201
Target Start/End: Original strand, 7934719 - 7934831
Alignment:
| Q |
89 |
attttgcaatattcagtttaagttgaattgcagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatca |
188 |
Q |
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| T |
7934719 |
attttgcaatattcagtttcagttgaattgcagctttaacagtggtagtctactggctttggtggtgtatgctaagatacaatttaaactcaaaggatca |
7934818 |
T |
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| Q |
189 |
caagttttgatga |
201 |
Q |
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|||||| |||||| |
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| T |
7934819 |
caagttctgatga |
7934831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 89 - 201
Target Start/End: Complemental strand, 34578965 - 34578853
Alignment:
| Q |
89 |
attttgcaatattcagtttaagttgaattgcagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatca |
188 |
Q |
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||||||||||||||| ||| | ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34578965 |
attttgcaatattcaatttcatttgaattgcagctttaacagtggtaatctactagctttggtggtgtattctaagatacaatttaaactcaaaggatca |
34578866 |
T |
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| Q |
189 |
caagttttgatga |
201 |
Q |
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||||||||||||| |
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| T |
34578865 |
caagttttgatga |
34578853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 7934586 - 7934658
Alignment:
| Q |
17 |
aatatggtggaggaaattggttagaagttacggtaataatgtctgtttggcaagttttataatgaaataggga |
89 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7934586 |
aatatggtggaggaaattggttagaagttatggtaataatgtctgtttggcaagttttataatgaaataggga |
7934658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 34579098 - 34579026
Alignment:
| Q |
17 |
aatatggtggaggaaattggttagaagttacggtaataatgtctgtttggcaagttttataatgaaataggga |
89 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34579098 |
aatatggtggaggaaattggttagaagttatggtaataatgtctgtttggcaagttttataatgaaataggga |
34579026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 111 - 201
Target Start/End: Original strand, 29846966 - 29847055
Alignment:
| Q |
111 |
ttgaattgcagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatga |
201 |
Q |
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|||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29846966 |
ttgaattgtagctttaacagtggtaatctactagctt-ggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatga |
29847055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 111 - 201
Target Start/End: Original strand, 29867160 - 29867249
Alignment:
| Q |
111 |
ttgaattgcagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatga |
201 |
Q |
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|||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29867160 |
ttgaattgtagctttaacagtggtaatctactagctt-ggtggtgtatgctaagatacaatttaaactcaaaggatcgcaagttttgatga |
29867249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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