View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_low_5 (Length: 531)
Name: NF14919_low_5
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Original strand, 10181933 - 10182444
Alignment:
| Q |
18 |
acaaccggcatctaattctacagcaccggtaatggaaattacggtgccaattgcagtgacggagc------------agcacatgcccacggttagtgat |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
10181933 |
acaaccggcatctaattctacagcaccggtaacggaaattacggtgccaattgcggtgacggagcagcctactgagcagcacatgcccacggttagtgat |
10182032 |
T |
|
| Q |
106 |
ctgactgttgctaagactattgatcatcctgaaacttctgcagccctagacgcaagtgcgaatgccttaggtgctaggtttgcattctcttatcgcttgg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10182033 |
ctgactgttgctaagactattgatcatcctgaaacttctgcagccctagacgcaagtgcgaatgccttaggtgctaagtttgcattctcttatcgcttgg |
10182132 |
T |
|
| Q |
206 |
cgcttgacaaagttacatacgagattgtccgtaatactgatattcccacattggctgaaccggtgctgaatttatcacatgagattaccccacattcaat |
305 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10182133 |
cgcttgacaaagttacggacgagattgtcagtaatactgatattcccacattggctgaaccggtgctgaatttatcacatgagattaccccacattcaat |
10182232 |
T |
|
| Q |
306 |
cgcaattcatattgacttttgacaaaaaatactgatgggtttgtcagtaataacgacactcccaaagaggttgcaccggagctgcagttacaacatgaaa |
405 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10182233 |
tgcaattcataccgacttttgac-aaaaatactgatgggtttgtcagtaataacgacactcccaaagaggatgcaccggagctgcagttacaacatgaaa |
10182331 |
T |
|
| Q |
406 |
ttgttccccggccctctcagtcgcacttcagctcaatgaggaggagggttctgacagtgaaagtgatggtgtggaaatacatgcagattctcctgtgtca |
505 |
Q |
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| T |
10182332 |
ttgttc-----ccctctcagtcgcacttcagctcaatgaggaggagggttctgacggtgaaagtgatggcgttgaaatacatgcagattctcctgtgtca |
10182426 |
T |
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| Q |
506 |
aagtcgcatccctttgct |
523 |
Q |
| |
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|||||||||||||||||| |
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| T |
10182427 |
aagtcgcatccctttgct |
10182444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 346 - 519
Target Start/End: Original strand, 26171008 - 26171176
Alignment:
| Q |
346 |
ttgtcagtaataacgacactcccaaagaggttgcaccggagctgcagttacaacatgaaattgttccccggccctctcagtcgcacttcagctcaatgag |
445 |
Q |
| |
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|||||||||| | |||||| ||||||||| |||| ||||| | || |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26171008 |
ttgtcagtaagagcgacacacccaaagagattgctccggaacagcggttacaacatgaaattgttcccaca-----tcagtcgcacttcagctcaatgag |
26171102 |
T |
|
| Q |
446 |
gaggagggttctgacagtgaaagtgatggtgtggaaatacatgcagattctcctgtgtcaaagtcgcatccctt |
519 |
Q |
| |
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| T |
26171103 |
gaggagggatctgatggtgaaagtgatgccaaggaaatacttgctgactcacctgtgtcaaagtcgcatccctt |
26171176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 186 - 287
Target Start/End: Original strand, 26170814 - 26170915
Alignment:
| Q |
186 |
tgcattctcttatcgcttggcgcttgacaaagttacatacgagattgtccgtaatactgatattcccacattggctgaaccggtgctgaatttatcacat |
285 |
Q |
| |
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||||||||| ||||||||||||||||| || ||||| | |||||||| ||||||| |||||| ||||| |||||||||||||||||||||| ||||| |
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| T |
26170814 |
tgcattctcgtatcgcttggcgcttgaaaacgttactgaagagattgtacgtaataatgatatccccactgtggctgaaccggtgctgaattttccacat |
26170913 |
T |
|
| Q |
286 |
ga |
287 |
Q |
| |
|
|| |
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|
| T |
26170914 |
ga |
26170915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 519
Target Start/End: Complemental strand, 16225665 - 16225497
Alignment:
| Q |
346 |
ttgtcagtaataacgacactcccaaagaggttgcaccggagctgcagttacaacatgaaattgttccccggccctctcagtcgcacttcagctcaatgag |
445 |
Q |
| |
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||||||| |||| ||||| ||||||||| |||| ||| | | || |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16225665 |
ttgtcagcaatattgacacacccaaagagattgctccgaaacagcggttacaacatgaaattgttcccaca-----tcagtcgcacttcagctcaatgag |
16225571 |
T |
|
| Q |
446 |
gaggagggttctgacagtgaaagtgatggtgtggaaatacatgcagattctcctgtgtcaaagtcgcatccctt |
519 |
Q |
| |
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||||||| ||||| |||||||||||| |||||||| | || || ||| ||||||||||||||||||| |
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| T |
16225570 |
gaggaggagtctgatggtgaaagtgatgccaaggaaatactctctgactcacctatgtcaaagtcgcatccctt |
16225497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 287
Target Start/End: Complemental strand, 16225859 - 16225758
Alignment:
| Q |
186 |
tgcattctcttatcgcttggcgcttgacaaagttacatacgagattgtccgtaatactgatattcccacattggctgaaccggtgctgaatttatcacat |
285 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || || | |||||||| | ||||| |||||| ||||| |||||||| ||||||||||||| ||||| |
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|
| T |
16225859 |
tgcattctcgtatcgcttggcacttgacaacgtcactgatgagattgtacataataatgatatacccactgtggctgaatcggtgctgaattttccacat |
16225760 |
T |
|
| Q |
286 |
ga |
287 |
Q |
| |
|
|| |
|
|
| T |
16225759 |
ga |
16225758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 186 - 299
Target Start/End: Complemental strand, 26797611 - 26797498
Alignment:
| Q |
186 |
tgcattctcttatcgcttggcgcttgacaaagttacatacgagattgtccgtaatactgatattcccacattggctgaaccggtgctgaatttatcacat |
285 |
Q |
| |
|
|||||| | |||||||||||| |||||||| || || | ||||||||||||||| ||||||||||| | ||| ||||| |||||| | ||| |||| |
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| T |
26797611 |
tgcatttttttatcgcttggctcttgacaacgtaactgatgagattgtccgtaatgatgatattcccataatggttgaactagtgctgcaattacaacat |
26797512 |
T |
|
| Q |
286 |
gagattaccccaca |
299 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
26797511 |
gagattactccaca |
26797498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 494
Target Start/End: Original strand, 637395 - 637452
Alignment:
| Q |
437 |
ctcaatgaggaggagggttctgacagtgaaagtgatggtgtggaaatacatgcagatt |
494 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||| ||||||||||| ||||||| |
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|
| T |
637395 |
ctcaatgaggatgaggggactgacagtgaaaggaatggcgtggaaatacaagcagatt |
637452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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