View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_low_51 (Length: 207)
Name: NF14919_low_51
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 42313372 - 42313555
Alignment:
| Q |
11 |
aagaatatgagagagatggagaggaacctcaccagaaagatagagggcatgaacggaaagcacccgcataaaccgtcatcgagaaggagaggaacctcac |
110 |
Q |
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| T |
42313372 |
aagaatatgagagagatggagaggaacctcaccggaaagatagagggcatgaacggaaagcacccgcataaaccgtcgtcgagaaggagaggaacctcac |
42313471 |
T |
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| Q |
111 |
cggaaggctggattgttgccatggattgttccggtgcattctccaaatatgtaacatagggagagtcgggttcagaaggagatt |
194 |
Q |
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| T |
42313472 |
cggaaggctggattgttgccatggattgttccggtgcattctccaaatatgtaacatagggagagtcgggttctgaaggagatt |
42313555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 41327101 - 41327210
Alignment:
| Q |
94 |
aaggagaggaacctcaccggaaggctggattgttgccatggattgttccggtgcattctccaaatatgtaacatagggagagtcgggttcagaaggagat |
193 |
Q |
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| T |
41327101 |
aaggagatgaacctcaccggaaggctggattgttgccatggattgttccggcgcattccccaaatatgtaacatagggagagtcgggttctgaaggagat |
41327200 |
T |
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| Q |
194 |
tcgatagaga |
203 |
Q |
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| T |
41327201 |
tcgatggaga |
41327210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 1722080 - 1722051
Alignment:
| Q |
46 |
aaagatagagggcatgaacggaaagcaccc |
75 |
Q |
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| T |
1722080 |
aaagatagagggcatgaacggaaagcaccc |
1722051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 20910209 - 20910318
Alignment:
| Q |
94 |
aaggagaggaacctcaccggaaggctggattgttgccatggattgttccggtgcattctccaaatatgtaacatagggagagtcgggttcagaaggagat |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| |||||||||||||||||||||||| ||||||||| |
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| T |
20910209 |
aaggagaggaacctcaccggaaggctggattgttgccatggattgttccggcgcattcccaaaatctgtaacatagggagagtcgggttctgaaggagat |
20910308 |
T |
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| Q |
194 |
tcgatagaga |
203 |
Q |
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| T |
20910309 |
tcgatggaga |
20910318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 20924657 - 20924766
Alignment:
| Q |
94 |
aaggagaggaacctcaccggaaggctggattgttgccatggattgttccggtgcattctccaaatatgtaacatagggagagtcgggttcagaaggagat |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| |||||||||||||||||||||||| ||||||||| |
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| T |
20924657 |
aaggagaggaacctcaccggaaggctggattgttgccatggattgttccggcgcattcccaaaatctgtaacatagggagagtcgggttctgaaggagat |
20924756 |
T |
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| Q |
194 |
tcgatagaga |
203 |
Q |
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||||| |||| |
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| T |
20924757 |
tcgatggaga |
20924766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 40163224 - 40163154
Alignment:
| Q |
128 |
gccatggattgttccggtgcattctccaaatatgtaacatagggagagtcgggttcagaaggagattcgat |
198 |
Q |
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|||||||||||||||| |||||||||| || ||||| |||||||||| | || || |||||||||||||| |
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| T |
40163224 |
gccatggattgttccgacgcattctccatatctgtaatatagggagagacaggctccgaaggagattcgat |
40163154 |
T |
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