View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14919_low_7 (Length: 456)
Name: NF14919_low_7
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 14 - 441
Target Start/End: Complemental strand, 20816081 - 20815656
Alignment:
| Q |
14 |
agaaaagacaatcaagggcaacttggtagggtgagacactagggcatagttctatatataatagaactaagacatgaaattatgtggatttttgtcgata |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20816081 |
agaaaagacaatcaagggcaacttggtagggtgagacactagggcatagttttatatataatagaactaagacatgaaattatgtggattt--gtcgata |
20815984 |
T |
|
| Q |
114 |
gattcagccaatataataggaatagagtaacgtaactgcgtggctgtccttggaatagcttgaatgacctaaatatctggatgtacgttgttggaattat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20815983 |
gattcagccaatataataggaatagagtaacgtaactgcgtggctgtccttggaatagcttgaatgacctaaatatctggatgtacgttgttggaattat |
20815884 |
T |
|
| Q |
214 |
atatgttgggggagcagcaatgaggataactctccaactatcacattattcacatatatagaggtgggatctatgcattatatctgcttgagactactaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20815883 |
atatgttgggggagcagcaatgaggataactctccaactatcacattattcacatatatagaggtgggatctatgcattatatctgcttgagactactaa |
20815784 |
T |
|
| Q |
314 |
ctttagttcaataaaattaattataaacacaattatttggactaatattgtcggcactgaattcagtcaaatcaatctttgaacttcatattttaattct |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20815783 |
ctttagttcaataaaattaattataaacacaattatttggactaatattgtcggcactgaattcagtcaaatcaatccttgaacttcatattttaattct |
20815684 |
T |
|
| Q |
414 |
atatgcatgcatgcttgggccagaaaac |
441 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
|
|
| T |
20815683 |
atatgcatgcatgcctgggccagaaaac |
20815656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University