View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_low_8 (Length: 426)
Name: NF14919_low_8
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 17473670 - 17473266
Alignment:
| Q |
1 |
tctagaacaaccaagttttttcaagctaggtgcaccttcacctaaaggattaaccctagggttatcaattccaaaaggtgcatttggatacaccaaatgc |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17473670 |
tctagaacaaccaagtttttccaagctaggtgcaccttcacctaaaggattaaccctagggttatcaattccaaaaggtgcatttgggtacaccaaatgc |
17473571 |
T |
|
| Q |
101 |
caaaccttatggaaaagattattttcaggctcaataataggttctgacccaatagggttagagctttgaaaataaggatgaattaaaatagctcctaata |
200 |
Q |
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| T |
17473570 |
caaaccttatggaaaagattattttcaggctcaataataggttctgacccaatagggttagaactgtgaaaataaggatgaattaaaatagctcctaata |
17473471 |
T |
|
| Q |
201 |
ttttaacatcataaggtaatttttcaattccagcttgaattgcaatgttatgtgcaatattagcaccagcactatcaccaccaatgaaaaccttatcaaa |
300 |
Q |
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| T |
17473470 |
ttttaacatcataaggtaatttttcaattccagcttgaattgcaatgttatgtgcaatattagcaccagcactatcaccaccaatgaaaaccttatcaaa |
17473371 |
T |
|
| Q |
301 |
atcaccatgttcaatcaaccatggttctgcattgttgatggtatcattggtatgattggaatgagaagatacccatttgagtgcagcccaacaatcatgg |
400 |
Q |
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| T |
17473370 |
atcaccatgttcaatcaaccatggttctgcattgttgatggtatcattggtatgattggaatgagaagatacccatttgagtgcagcccaacaatcatgg |
17473271 |
T |
|
| Q |
401 |
taaca |
405 |
Q |
| |
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| T |
17473270 |
taaca |
17473266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 5 - 405
Target Start/End: Original strand, 15233866 - 15234257
Alignment:
| Q |
5 |
gaacaaccaagttttttcaagctaggtgcaccttcacctaaaggattaaccctagggttatcaattccaaaaggtgcatttggatacaccaaatgccaaa |
104 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| | |||||||||| |
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| T |
15233866 |
gaacaaccaagtttttccaagctaggtgcaccttcacccaaaggattaaacctagggttatcaattccaaaaggtgcatttgggtacgcaaaatgccaaa |
15233965 |
T |
|
| Q |
105 |
ccttatggaaaagattattttcaggctcaataataggttctgacccaatagggttagagctttgaaaataaggatgaattaaaatagctcctaatatttt |
204 |
Q |
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|||||| || ||||||||| |||||||||||||||||||||||||||||||||| || | ||||||||||||||||| |||||||||||||||||| |
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| T |
15233966 |
aagtatggataatattattttctggctcaataataggttctgacccaatagggttagcactgtaaaaataaggatgaattataatagctcctaatatttt |
15234065 |
T |
|
| Q |
205 |
aacatcataaggtaatttttcaattccagcttgaattgcaatgttatgtgcaatattagcaccagcactatcaccaccaatgaaaaccttatcaaaatca |
304 |
Q |
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| T |
15234066 |
aacatcacaaggtaaattttcaagtccagcttgaattgcaatgttatgagcaatattagcaccagcactatcaccaccaatgaaaagtttattaaaatta |
15234165 |
T |
|
| Q |
305 |
ccatgttcaatcaaccatggttctgcattgttgatggtatcattggtatgattggaatgagaagatacccatttgagtgcagcccaacaatcatggtaac |
404 |
Q |
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|||||||| |||||||||||||||| |||||||| || ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15234166 |
ccatgttcgatcaaccatggttctggattgttga---------tgttattattggaatgagaagatatccatttgagtgcagcccaacaatcatggtaac |
15234256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 33902069 - 33902017
Alignment:
| Q |
251 |
tgtgcaatattagcaccagcactatcaccaccaatgaaaaccttatcaaaatc |
303 |
Q |
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|||||||||||||| |||||||||||||| || | |||||| || |||||||| |
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| T |
33902069 |
tgtgcaatattagccccagcactatcacctcctaagaaaactttctcaaaatc |
33902017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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