View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1491_high_1 (Length: 406)
Name: NF1491_high_1
Description: NF1491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1491_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 32547047 - 32547431
Alignment:
| Q |
17 |
cttcaaacaattaagacttataaaatgggttgggatgcaaaccttgagaaagataatgtcgattatgttgtagatagcaaaatgagaggagagttcatag |
116 |
Q |
| |
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||||||||| | || |||| |||||| ||||| ||||||||||| | | |||| ||| |||||||||| |||||||||||||||||| || ||||||| |
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| T |
32547047 |
cttcaaacattgaatacttttaaaattggttgtgatgcaaacctacaagatgatattgttgattatgttgaagatagcaaaatgagaggggaattcatag |
32547146 |
T |
|
| Q |
117 |
ccaagtatcacagagcttgttttgaacctcttttaatagctgggtttggagaaaacatcatggatgaattgttctcaaggtttgcaaagctggttgcaca |
216 |
Q |
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||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || || |
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| T |
32547147 |
ccaagtatcacagagctgtttatgaacctcttttaatagccgggtttggagaaaacatcatggatgaattgttctcaaggtttgcaaagctgatagctca |
32547246 |
T |
|
| Q |
217 |
actcattgagatagagacattggagtttactaatattgtattgttcatgaccaagaatccttgaagatggtaaggtgaaggttgtactaaaatccaagaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32547247 |
actcattgagatagagacattggagtttactaatattgtattgttcatgaccaagaatccttgaagatggtaaggtgaaggttgtactaaaatccaagaa |
32547346 |
T |
|
| Q |
317 |
gaatatcattaattaatatgaataaaatttagaataagatggtaaaataaggttgtcatagtttgatgatgtttgtccctttgcttctc |
405 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| |
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| T |
32547347 |
gaatatc----attaatatgaataaaatttagaataagatggtaaaataaggttgccatagtttgatgatgtttgtccttttgattctc |
32547431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 32648210 - 32647849
Alignment:
| Q |
17 |
cttcaaacaattaagacttataaaatgggttgggatgcaaaccttgagaaagataatgtcgattatgttgtagatagcaaaatgagaggagagttcatag |
116 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| |
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| T |
32648210 |
cttcaaacaattaagacttttaaaatgggttgggatgcaaaccttgagaaagataatgttgattatgttgtagatagcaaaatgagaggggaattcatag |
32648111 |
T |
|
| Q |
117 |
ccaagtatcacagagcttgttttgaacctcttttaatagctgggtttggagaaaacatcatggatgaattgttctcaaggtttgcaaagctggttgcaca |
216 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | || || |
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| T |
32648110 |
ccaagtatcacagagctgtttatgaacctcttttaatagctggatttggagaaaacattatggatgaattgttctcaaggtttgcaaagctgatagctca |
32648011 |
T |
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| Q |
217 |
actcattgagatagagacattggagtttactaatattgtattgttcatgaccaagaatccttgaagatggtaaggtgaaggttgtactaaaatccaagaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||| ||||||||| |
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| T |
32648010 |
actcattgagatagagacattggagtttactaatattgtattgttcatgaccaagaatcctt-aatattgtaagatgaaggttgtact-ttatccaagaa |
32647913 |
T |
|
| Q |
317 |
gaatatcattaattaatatgaataaaatttagaataagatggtaaaataaggttgtcatagtttgatg |
384 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| |
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|
| T |
32647912 |
gaatatc----attaatatgaacaaaatttagaataagatggtaaaataaggctgccatagtttgatg |
32647849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 32552747 - 32552959
Alignment:
| Q |
17 |
cttcaaacaattaagacttataaaatgggttgggatgcaaaccttgagaaagataatgtcgattatgttgtagatagcaaaatgagaggagagttcatag |
116 |
Q |
| |
|
||||||||| | ||||| | |||||| ||||||||||||||||| | |||||| ||| |||||||| || |||||||| ||||||||||||||||||| |
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| T |
32552747 |
cttcaaacactgaagacatttaaaatcggttgggatgcaaacctacaagaagatattgttgattatgtcgttgatagcaatatgagaggagagttcatag |
32552846 |
T |
|
| Q |
117 |
ccaagtatcacagagcttgttttgaacctcttttaatagctgggtttggagaaaacatcatggatgaattgttctcaaggtttgcaaagctggttgcaca |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||||| ||||| ||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
32552847 |
ccaagtatcacagagcttgttttgaatctcttttaatagctgagtttggtgaaaatgtcatggatgaattattctcaaggtttgcaaagctaattgcaca |
32552946 |
T |
|
| Q |
217 |
actcattgagata |
229 |
Q |
| |
|
| ||||||||||| |
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|
| T |
32552947 |
attcattgagata |
32552959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 32549430 - 32549619
Alignment:
| Q |
17 |
cttcaaacaattaagacttataaaatgggttgggatgcaaaccttgagaaagataatgtcgattatgttgtagatagcaaaatgagaggagagttcatag |
116 |
Q |
| |
|
||||||||| | ||||||| |||||| |||| |||||||||||| | |||||| ||| ||| | || || ||||| |||||||||| ||||||||||| |
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| T |
32549430 |
cttcaaacattgaagacttttaaaatcggtttggatgcaaacctacaagaagatattgttgatcacgtcgttgatagtaaaatgagagtagagttcatag |
32549529 |
T |
|
| Q |
117 |
ccaagtatcacagagcttgttttgaacctcttttaatagctgggtttggagaaaacatcatggatgaattgttctcaaggtttgcaaagc |
206 |
Q |
| |
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|||||||| ||||||||| ||| ||| || ||||||||||| |||||| ||| | |||||||||||||||||||||||||||||||||| |
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| T |
32549530 |
ccaagtatgacagagcttttttggaatctattttaatagctcagtttggtgaagatatcatggatgaattgttctcaaggtttgcaaagc |
32549619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 84 - 259
Target Start/End: Original strand, 27879114 - 27879289
Alignment:
| Q |
84 |
ttgtagatagcaaaatgagaggagagttcatagccaagtatcacagagcttgttttgaacctcttttaatagctgggtttggagaaaacatcatggatga |
183 |
Q |
| |
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|||| ||||||||||||||||| ||| | ||||||||||| ||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| |
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| T |
27879114 |
ttgttgatagcaaaatgagaggggagcttatagccaagtaccacagagctgtttttgaacctcttttaatagacgggtttggtgaaaatatcatggatga |
27879213 |
T |
|
| Q |
184 |
attgttctcaaggtttgcaaagctggttgcacaactcattgagatagagacattggagtttactaatattgtattg |
259 |
Q |
| |
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|||||||||||| |||||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
27879214 |
attgttctcaagatttgcaaagctgcttgcacagctcattgagttagagacattagagtttactaatattgtattg |
27879289 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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