View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1491_high_3 (Length: 314)

Name: NF1491_high_3
Description: NF1491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1491_high_3
NF1491_high_3
[»] chr4 (15 HSPs)
chr4 (16-242)||(5159986-5160213)
chr4 (15-239)||(5172905-5173130)
chr4 (8-242)||(5195628-5195863)
chr4 (15-239)||(4842395-4842620)
chr4 (6-242)||(5182234-5182468)
chr4 (6-242)||(4856863-4857097)
chr4 (13-242)||(5213794-5214021)
chr4 (235-313)||(4842673-4842751)
chr4 (235-313)||(5172774-5172852)
chr4 (237-314)||(5159857-5159934)
chr4 (235-314)||(5182105-5182184)
chr4 (235-314)||(5195499-5195578)
chr4 (6-152)||(7142256-7142402)
chr4 (235-309)||(5213670-5213744)
chr4 (124-239)||(5202773-5202885)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 5160213 - 5159986
Alignment:
Q  16 atcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5160213 atcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttag 5160114  T
Q  116 gaaaccac-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaa 214  Q
    |||||||| ||||||||||||||||||||| ||||||| |  ||||||| ||||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  5160113 gaaaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaa 5160014  T
Q  215 tgaaaatgatccttgcatgtaatttcca 242  Q
    ||||||||||||||||||||||||||||    
T  5160013 tgaaaatgatccttgcatgtaatttcca 5159986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 5173130 - 5172905
Alignment:
Q  15 tatcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaattta 114  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5173130 tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagggacttcaattgaaattta 5173031  T
Q  115 ggaaaccac-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctca 213  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  | |||||||| | |||||||||||| || | |    
T  5173030 ggaaaccactttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatgtagatgctgaagattggagtgattagccaaaatgataa 5172931  T
Q  214 atgaaaatgatccttgcatgtaattt 239  Q
     |||||||||||||||||||||||||    
T  5172930 gtgaaaatgatccttgcatgtaattt 5172905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 5195863 - 5195628
Alignment:
Q  8 ccaagaatatcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattg 107  Q
    ||||| ||| |||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  5195863 ccaagtataccaaattatattgatatgaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaacaataagtgacttcaattg 5195764  T
Q  108 aaatttaggaaaccac-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaa 206  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||| |  ||||||| ||||||||||||||||||  ||||||| ||||||||||||||    
T  5195763 aaatttaggaaaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaa 5195664  T
Q  207 gtgctcaatgaaaatgatccttgcatgtaatttcca 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  5195663 gtgctcaatgaaaatgatccttgcatgtaatttcca 5195628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 4842395 - 4842620
Alignment:
Q  15 tatcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaattta 114  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| ||||||||||||||||||    
T  4842395 tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagggacttcaattgaaattta 4842494  T
Q  115 ggaaaccac-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctca 213  Q
    ||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||  | |||||||| | |||||||||||| || | |    
T  4842495 ggaaaccactttgttttttcagtttcaatgtgtactccaatactgtttttagatgaaatatatagatgctgaagattggagtgattagccaaattgataa 4842594  T
Q  214 atgaaaatgatccttgcatgtaattt 239  Q
     |||||||||||||||||||||||||    
T  4842595 gtgaaaatgatccttgcatgtaattt 4842620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 6 - 242
Target Start/End: Complemental strand, 5182468 - 5182234
Alignment:
Q  6 gtccaagaatatcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaat 105  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||    
T  5182468 gtccaagaatatcaaattatattgatatgaaagaaaagtaggaatgacacctcctttctccttgtttaggttgcaatttctaagaatgagtgtcttcaat 5182369  T
Q  106 tgaaatttaggaaaccac-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagcca 204  Q
    |||||||| ||||||||| |||| ||||||||||||||| | ||||||   ||||||| || |||||||||||||  | |||||||  | ||||||||||    
T  5182368 tgaaatttgggaaaccactttgtcttttcagtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattagcca 5182272  T
Q  205 aagtgctcaatgaaaatgatccttgcatgtaatttcca 242  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5182271 aagtgctcaatgaaaatgatccttgcatgtaatttcca 5182234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 6 - 242
Target Start/End: Original strand, 4856863 - 4857097
Alignment:
Q  6 gtccaagaatatcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaat 105  Q
    ||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||    
T  4856863 gtccaagaataccaaattatattgatatgaaagaaaagtaggaatgacacttccttcgtccatgtttaggttgcaatttctaagaatgagtgtcttcaat 4856962  T
Q  106 tgaaatttaggaaaccac-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagcca 204  Q
    |||||||| ||||||||| |||| ||||||||||||||| | ||||||   ||||||| || |||||||||||||  | |||||||  | ||||||||||    
T  4856963 tgaaatttgggaaaccactttgtcttttcagtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattagcca 4857059  T
Q  205 aagtgctcaatgaaaatgatccttgcatgtaatttcca 242  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  4857060 aagtggtcaatgaaaatgatccttgcatgtaatttcca 4857097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 5214021 - 5213794
Alignment:
Q  13 aatatcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatt 112  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  5214021 aatatcaaactatattgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttctaagaatgagtgtcttcaattgaaatt 5213922  T
Q  113 taggaaaccac-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgct 211  Q
    | || |||||| |||| |||||||||||||||| | | ||| |||   |||  |||||||||||||||  | | |||||| | |||||||||||||||||    
T  5213921 tgggtaaccactttgtcttttcagtttcaatgtttgcaccaatgc---tttgtgatgaaatatatagatgctggagattggagtgattagccaaagtgct 5213825  T
Q  212 caatgaaaatgatccttgcatgtaatttcca 242  Q
    |||||||||||||||||||||||||||||||    
T  5213824 caatgaaaatgatccttgcatgtaatttcca 5213794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 4842673 - 4842751
Alignment:
Q  235 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagc 313  Q
    ||||||||| ||||| ||||| |||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  4842673 aatttccaccgaacagattatggctaaggtcaagaattctgaggtttgttaagttacttaaacactcaggaagtttagc 4842751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 5172852 - 5172774
Alignment:
Q  235 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagc 313  Q
    ||||||||||||| | ||||| |||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  5172852 aatttccactgaatagattatggctaaggtcaagaattctgaggtttgttaagttacttaaacactcaggaagtttagc 5172774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 5159934 - 5159857
Alignment:
Q  237 tttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagca 314  Q
    ||||||||||||| |||||  ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  5159934 tttccactgaacagattattactaagttcaagaactctgaggtttgttaagttgcttaaacactcaggaaatttagca 5159857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 5182184 - 5182105
Alignment:
Q  235 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagca 314  Q
    ||||||||||||||| |||||  ||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||    
T  5182184 aatttccactgaacagattattactaagttcaagaactctaaggtttgttaagttgcttaaacactctggaagtttagca 5182105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 5195578 - 5195499
Alignment:
Q  235 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagca 314  Q
    ||||||||||||||| |||||  ||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||    
T  5195578 aatttccactgaacagattattactaagttcaagaactctgaggtttgttaagttgcttaaacaatctggaagtttagca 5195499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 152
Target Start/End: Complemental strand, 7142402 - 7142256
Alignment:
Q  6 gtccaagaatatcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaat 105  Q
    ||||||||||  |||||| | |||||| |||| |||| ||||||||||| ||||||||||| ||||| ||||||||||| |||  || ||||  |  | |    
T  7142402 gtccaagaatgccaaattatgttgatatgaaaaaaaactaggaatgacatttcctttgtccatgttttggttgcaatttttaa-cataagtgtatgtagt 7142304  T
Q  106 tgaaatttaggaaaccac-ttgttttttcagtttcaatgtgtactcca 152  Q
    |||||| ||||||||||| |||| ||||||||||||| ||||||||||    
T  7142303 tgaaatctaggaaaccactttgtattttcagtttcaacgtgtactcca 7142256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 5213744 - 5213670
Alignment:
Q  235 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtt 309  Q
    ||||||||||||||||||||| |||||| |||||||   | |||||||||||||||||||||||||| |||||||    
T  5213744 aatttccactgaacaaattatagctaagttcaagaacattcaggtttgttaagttgcttaaacactcgggaagtt 5213670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 5202885 - 5202773
Alignment:
Q  124 ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatga 223  Q
    ||||||||| ||||||||||||| ||||| |||| | |   || |||||||||||| || ||||  |||| ||||||||||||||||| | ||||||||     
T  5202885 ttgttttttaagtttcaatgtgttctccaatgctttct---gaggaaatatatagatcctgaagcgtgaagtgattagccaaagtgcttactgaaaatgg 5202789  T
Q  224 tccttgcatgtaattt 239  Q
    ||||||| ||| ||||    
T  5202788 tccttgcgtgtgattt 5202773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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