View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1491_high_6 (Length: 243)
Name: NF1491_high_6
Description: NF1491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1491_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 10447352 - 10447571
Alignment:
| Q |
19 |
ttgataaaagtttataaagagaagacactttacatcctataagctggttttacaaggatgagttatacccaaatttcaaa--atcctattatttttattc |
116 |
Q |
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| T |
10447352 |
ttgataaaagtttataaaaa-aagacacttttcatcttataagccggttttacgaagatgaattatacccaaatttcaacgcatcctatcatttttattc |
10447450 |
T |
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| Q |
117 |
aaatttagtaaagtatatataattacttgcaacctttacaggtaggcttctattatatcggttcatgcggtgaaggttatctttttatgctacttatgac |
216 |
Q |
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| T |
10447451 |
aaatttagtaaagtatatataattacttgcaacctttacaggtaggcttctattatatcggttcatgcggtgaaggttatctttttatgctacttatgac |
10447550 |
T |
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| Q |
217 |
aaaagagtagtttcatctctc |
237 |
Q |
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|||||||||||||||| |||| |
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| T |
10447551 |
aaaagagtagtttcatatctc |
10447571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 2716377 - 2716455
Alignment:
| Q |
19 |
ttgataaaagtttataaagagaagacactttacatcctataagctggttttacaaggatgagttatacccaaatttcaa |
97 |
Q |
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||||||||||||||||||||| ||||||| || | |||||||||||||| |||||||||||| ||| |||||||| |
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| T |
2716377 |
ttgataaaagtttataaagaggagacactcctcaccttataagctggttttgtaaggatgagttaggccccaatttcaa |
2716455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 6748281 - 6748203
Alignment:
| Q |
22 |
ataaaagtttataaagagaagacactttacatcctataagctggttttacaaggatgagttata-cccaaatttcaaaa |
99 |
Q |
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| T |
6748281 |
ataaaagtttataaaaaaaagacactcttcatcttataagctggttttgtaaggatgcgttaaattccaaatttcaaaa |
6748203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 10429773 - 10429854
Alignment:
| Q |
19 |
ttgataaaagtttataaagagaagacactttacatcctataagctggttttacaaggatgagttata-cccaaatttcaaaa |
99 |
Q |
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||||||| ||||||||||||| ||||||| |||| || |||| |||||| |||||||||||| | |||||||||||||| |
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| T |
10429773 |
ttgataagagtttataaagaggagacactcctcatcttacaagccggttttgtaaggatgagttagaccccaaatttcaaaa |
10429854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 10542133 - 10542069
Alignment:
| Q |
19 |
ttgataaaagtttataaagagaagacactttacatcctataagctggttttacaaggatgagtta |
83 |
Q |
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||||||| ||||||||||||| ||||||| |||| || ||||||||||| |||||||||||| |
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| T |
10542133 |
ttgataagagtttataaagaggagacactcctcatcttacaagctggttttgtaaggatgagtta |
10542069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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