View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1491_high_8 (Length: 231)
Name: NF1491_high_8
Description: NF1491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1491_high_8 |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 36526674 - 36526475
Alignment:
| Q |
11 |
cacagacaagagaattggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgt |
110 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36526674 |
cacagacaagagaagtggattagaccagtagctggggaagtgaagtgcaatgtcgacgcagcaatttttaaggattaaggatgttatggggtcggtatgt |
36526575 |
T |
|
| Q |
111 |
gtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagc |
210 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36526574 |
gtctaagaggtgatcgatgggagttcattaaagcgaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagctagaggtctaaaagaagc |
36526475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 37924029 - 37923827
Alignment:
| Q |
11 |
cacagacaagagaattggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgt |
110 |
Q |
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||||||||| || | |||| || ||| |||| |||||||||||||||||||| |||||| ||||||||||||| |||| ||||| | |||||||||| |
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| T |
37924029 |
cacagacaaaaggagtggactaaaccggtagtcggggaagtgaagtgcaatgttgatgcaacaatttttaaggaacaaggttgtta--gagtcggtatgt |
37923932 |
T |
|
| Q |
111 |
gtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagc |
210 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37923931 |
gtctaagaggggatcgaggggagttcattaaagcaaagacaacatagtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagc |
37923832 |
T |
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| Q |
211 |
gataa |
215 |
Q |
| |
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||||| |
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| T |
37923831 |
gataa |
37923827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 4430469 - 4430670
Alignment:
| Q |
16 |
acaagagaattggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtcta |
115 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4430469 |
acaagagaggtggattagaccagtagctggggaagtgaagtgcaatgttgatgcgacaatttttaaggatcaaggatgttatggggtcggtatgtgtcta |
4430568 |
T |
|
| Q |
116 |
agaggtg-atcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgata |
214 |
Q |
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||||||| ||||| |||||||||| ||||||| ||| | ||||||||| ||||||||||||||||||||||| ||||| |||||||||| |||||||| |
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| T |
4430569 |
agaggtgtatcgagaggagttcatttaagcaaatacatcatggtacaaaagtctcccacaacccaaagaagcataagcagaaggtctaaaataagcgata |
4430668 |
T |
|
| Q |
215 |
at |
216 |
Q |
| |
|
|| |
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|
| T |
4430669 |
at |
4430670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 23269746 - 23269932
Alignment:
| Q |
26 |
tggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatc |
125 |
Q |
| |
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||||||||| | |||||| |||||||||||| |||||||| || |||| ||||||||| |||| ||||||||| | | |||||| | | ||| |||| |
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| T |
23269746 |
tggattagatcgttagctgcggaagtgaagtgtaatgtcgacgcgacaatctttaaggatcaaggttgttatgggattgatatgtgcttgacaggggatc |
23269845 |
T |
|
| Q |
126 |
gatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcga |
212 |
Q |
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|| |||||||||| | ||| |||||||| ||||||| ||||||| | |||||||| || || ||||||||||||||||||||||||| |
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| T |
23269846 |
gaggggagttcatgagagcgaagacagcttggtacagaggtctctctcaacccaatgaggcggaagcaagaggtctaaaagaagcga |
23269932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 43 - 215
Target Start/End: Original strand, 10785850 - 10786022
Alignment:
| Q |
43 |
tggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaa |
142 |
Q |
| |
|
||||||||||||||| ||||| ||| || ||||||||||||| |||| ||||||||| ||||||||||| | ||||| |||||| |||||||||||| | |
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| T |
10785850 |
tggggaagtgaagtgtaatgttgatacaacaatttttaaggaacaaggttgttatgggatcggtatgtgtttgagaggggatcgaggggagttcattaga |
10785949 |
T |
|
| Q |
143 |
gcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataa |
215 |
Q |
| |
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|| |||||| | ||||||||||| |||||||||||||||||| | |||||||||||||||||||| |||||| |
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| T |
10785950 |
gcgaagacaacttggtacaaaggcatcccacaacccaaagaagtaaaagcaagaggtctaaaagaaacgataa |
10786022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 212
Target Start/End: Complemental strand, 40728566 - 40728404
Alignment:
| Q |
44 |
ggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatg---ttatggggtcggtatgtgtctaagaggtgatcgatgggagttcatta |
140 |
Q |
| |
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||||| ||||||| |||||| |||||| |||||||||||||| ||||| | |||||||||||| ||||| |||||||| || ||||||||| |
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| T |
40728566 |
ggggaggtgaagtacaatgtagatgcaacaatttttaaggatcaaggaggcggttatggggtcggaatgtgcctaagagg------at---agttcatta |
40728476 |
T |
|
| Q |
141 |
aagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcga |
212 |
Q |
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||| |||||| | ||||| | |||||||| | ||||||||||||||||||||||||||||||| ||||||| |
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| T |
40728475 |
gagccaagacatcttggtatacaggtctccaataacccaaagaagcagaagcaagaggtctaaaggaagcga |
40728404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 13019258 - 13019138
Alignment:
| Q |
95 |
tatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaa |
194 |
Q |
| |
|
||||||||||| ||| |||| ||||| ||| || |||||||||||| || |||||| | |||| ||||| ||||||||| |||| || |||||||||| |
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| T |
13019258 |
tatggggtcggcatgcgtcttagaggggattgaggggagttcattagggcgaagacaacttggtttaaaggcctcccacaatccaacgaggcagaagcaa |
13019159 |
T |
|
| Q |
195 |
gaggtctaaaagaagcgataa |
215 |
Q |
| |
|
| ||| ||||||||||||||| |
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|
| T |
13019158 |
gtggtttaaaagaagcgataa |
13019138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 29468749 - 29468570
Alignment:
| Q |
26 |
tggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaattttt-aaggattaaggatgttatggggtcggtatgtgtctaagaggtgat |
124 |
Q |
| |
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||||||||||| ||||| | || ||| | ||||||||||| |||| ||||||| |||||| || ||||||||||| || | ||||| |||||||| | |
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| T |
29468749 |
tggattagaccggtagccagtgaggtggattgcaatgtcgacgcagtaattttttaaggatcaatgatgttatggg-tcagaatgtgcctaagaggggtg |
29468651 |
T |
|
| Q |
125 |
cgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaa |
205 |
Q |
| |
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||| ||||||||||| ||| |||||| | ||||| ||||||||||||||||| |||||||| ||||| ||||||||||| |
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| T |
29468650 |
cgaggggagttcattggagcgaagacaacttggtataaaggtctcccacaacctaaagaagcgaaagcacgaggtctaaaa |
29468570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 211
Target Start/End: Complemental strand, 18998 - 18846
Alignment:
| Q |
59 |
aatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaa-agcaaagacagcgtgg |
157 |
Q |
| |
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||||||||| || ||||||| ||||| |||||||||| | |||||| |||||||| ||||| |||| | |||||| |||| ||| |||||| | ||| |
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|
| T |
18998 |
aatgtcgatacaacaatttt-aaggagtaaggatgttgttgggtcgacatgtgtcttagaggggatcaaggggagtacattgggagcgaagacaacttgg |
18900 |
T |
|
| Q |
158 |
tacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcg |
211 |
Q |
| |
|
| |||||||||||||||||||| || || ||||||||||| ||||||||||| |
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|
| T |
18899 |
tttaaaggtctcccacaacccaatgaggcgtaagcaagaggtttaaaagaagcg |
18846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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