View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1491_low_2 (Length: 381)
Name: NF1491_low_2
Description: NF1491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1491_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 70 - 364
Target Start/End: Complemental strand, 12652629 - 12652335
Alignment:
| Q |
70 |
ataacttaataacattcctcttcgtcaaaatcataaatctaataacaatgttcatcaatctcttgattaaaaacttattgaactacataaaaaataaaat |
169 |
Q |
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| T |
12652629 |
ataacttaataacattcctcttcgtcaaaatcataaatctaataacaatgttcatcaatctcttgattaaaaacttattgaactacataaaaaattaaac |
12652530 |
T |
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| Q |
170 |
attcattcctccaaaagaaagaaggttttccttgtaatttataatttgcaacattcgtggctctccattaacccaaacttcctcaatcctttgggtactt |
269 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12652529 |
attcattcctccaaaagaaagaaggttttccttgtaacttataatttgcaaccttcgtggctctccattaacacaaacttcctcaatcctttgggtactt |
12652430 |
T |
|
| Q |
270 |
aaatcaaaacatgctgactttgtatcttcttttatgtagaaaagaatactcttgattcctaccgcgatagggcggataacgtcaggtaaaggtcc |
364 |
Q |
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| T |
12652429 |
aaatcaaaacatgctaactttgtatcttcttttatgtagaaaagaatactcttaattcctaccgcgatagggcggataatgtcaggtaaaggtcc |
12652335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 169 - 364
Target Start/End: Complemental strand, 12647416 - 12647221
Alignment:
| Q |
169 |
tattcattcctccaaaagaaagaaggttttccttgtaatttataatttgcaacattcgtggctctccattaacccaaacttcctcaatcctttgggtact |
268 |
Q |
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| T |
12647416 |
tattcattactccgaaagaaagaaggtttttcttataagttataatttgcaacctttgtggctcttcattaacccaaatttcctcaatcctttgggtact |
12647317 |
T |
|
| Q |
269 |
taaatcaaaacatgctgactttgtatcttcttttatgtagaaaagaatactcttgattcctaccgcgatagggcggataacgtcaggtaaaggtcc |
364 |
Q |
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| T |
12647316 |
taaatcaaaacatgctaactccgtatcttcttttatgtagaacagaacactctttattcctaccgcgataggacgggtaatgtcaggtaaaggtcc |
12647221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 12652767 - 12652702
Alignment:
| Q |
2 |
aaaagagattgaagcatagaaaaattacaaatgtgtttatttctccaatacttgatgtcattcaat |
67 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
12652767 |
aaaagagattgaagcatagaaaaattacaaatgtgtttatttctccaatacttgatattattcaat |
12652702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 12647558 - 12647493
Alignment:
| Q |
5 |
agagattgaagcatagaaaaattacaaatgtgtttatttctccaatacttgatgtcattcaataaa |
70 |
Q |
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| T |
12647558 |
agagattgaagcatagaaaaattacaaatgagtttatttctcccatacttgataatattcaataaa |
12647493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 12647463 - 12647417
Alignment:
| Q |
66 |
ataaataacttaataacattcctcttcgtcaaaatcataaatctaat |
112 |
Q |
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| T |
12647463 |
ataaataacttaatagcattcctcttcatcaaaatcataaatctaat |
12647417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 276
Target Start/End: Complemental strand, 12725163 - 12725053
Alignment:
| Q |
169 |
tattcattcctccaaaagaaagaaggttttccttgtaatttataatttgcaacat---tcgtggctctccattaacccaaacttcctcaatcctttgggt |
265 |
Q |
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||||||||||| ||||||||||||| |||||||| ||| ||| || |||||| | ||| |||| | ||||||| || |||||||||||||||||| |
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| T |
12725163 |
tattcattcctacaaaagaaagaagattttccttataagttacgatctgcaaccaagctggtgactctgctttaaccccaatttcctcaatcctttgggt |
12725064 |
T |
|
| Q |
266 |
acttaaatcaa |
276 |
Q |
| |
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||||||||||| |
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|
| T |
12725063 |
acttaaatcaa |
12725053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 275
Target Start/End: Complemental strand, 12706034 - 12705925
Alignment:
| Q |
166 |
aaatattcattcctccaaaagaaagaaggttttccttgtaatttataatttgcaacattcgtggctctccattaacccaaacttcctcaatcctttgggt |
265 |
Q |
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||||||| |||||| |||||||||||||||||||||| ||| |||||||||||| || |||||| || ||| | ||||||||||||||||| |
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| T |
12706034 |
aaatattaattccttcaaaagaaagaaggttttccttataaacaataatttgcaacccagctgactctcctttgaccttgatctcctcaatcctttgggt |
12705935 |
T |
|
| Q |
266 |
acttaaatca |
275 |
Q |
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|||||||||| |
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| T |
12705934 |
acttaaatca |
12705925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 12711586 - 12711622
Alignment:
| Q |
166 |
aaatattcattcctccaaaagaaagaaggttttcctt |
202 |
Q |
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||||||| |||||| |||||||||||||||||||||| |
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| T |
12711586 |
aaatattaattccttcaaaagaaagaaggttttcctt |
12711622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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