View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1491_low_3 (Length: 314)
Name: NF1491_low_3
Description: NF1491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1491_low_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 5160213 - 5159986
Alignment:
| Q |
16 |
atcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5160213 |
atcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttag |
5160114 |
T |
|
| Q |
116 |
gaaaccac-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaa |
214 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||| | ||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||| |
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|
| T |
5160113 |
gaaaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaa |
5160014 |
T |
|
| Q |
215 |
tgaaaatgatccttgcatgtaatttcca |
242 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
5160013 |
tgaaaatgatccttgcatgtaatttcca |
5159986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 5173130 - 5172905
Alignment:
| Q |
15 |
tatcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaattta |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
5173130 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagggacttcaattgaaattta |
5173031 |
T |
|
| Q |
115 |
ggaaaccac-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctca |
213 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| | |||||||||||| || | | |
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|
| T |
5173030 |
ggaaaccactttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatgtagatgctgaagattggagtgattagccaaaatgataa |
5172931 |
T |
|
| Q |
214 |
atgaaaatgatccttgcatgtaattt |
239 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5172930 |
gtgaaaatgatccttgcatgtaattt |
5172905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 5195863 - 5195628
Alignment:
| Q |
8 |
ccaagaatatcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattg |
107 |
Q |
| |
|
||||| ||| |||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |
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|
| T |
5195863 |
ccaagtataccaaattatattgatatgaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaacaataagtgacttcaattg |
5195764 |
T |
|
| Q |
108 |
aaatttaggaaaccac-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaa |
206 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||| | ||||||| |||||||||||||||||| ||||||| |||||||||||||| |
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|
| T |
5195763 |
aaatttaggaaaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaa |
5195664 |
T |
|
| Q |
207 |
gtgctcaatgaaaatgatccttgcatgtaatttcca |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
5195663 |
gtgctcaatgaaaatgatccttgcatgtaatttcca |
5195628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 4842395 - 4842620
Alignment:
| Q |
15 |
tatcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaattta |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
4842395 |
tatcaaattatattgataagaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagggacttcaattgaaattta |
4842494 |
T |
|
| Q |
115 |
ggaaaccac-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctca |
213 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| | |||||||| | |||||||||||| || | | |
|
|
| T |
4842495 |
ggaaaccactttgttttttcagtttcaatgtgtactccaatactgtttttagatgaaatatatagatgctgaagattggagtgattagccaaattgataa |
4842594 |
T |
|
| Q |
214 |
atgaaaatgatccttgcatgtaattt |
239 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
4842595 |
gtgaaaatgatccttgcatgtaattt |
4842620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 6 - 242
Target Start/End: Complemental strand, 5182468 - 5182234
Alignment:
| Q |
6 |
gtccaagaatatcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaat |
105 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5182468 |
gtccaagaatatcaaattatattgatatgaaagaaaagtaggaatgacacctcctttctccttgtttaggttgcaatttctaagaatgagtgtcttcaat |
5182369 |
T |
|
| Q |
106 |
tgaaatttaggaaaccac-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagcca |
204 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||||||||||| | |||||| ||||||| || ||||||||||||| | ||||||| | |||||||||| |
|
|
| T |
5182368 |
tgaaatttgggaaaccactttgtcttttcagtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattagcca |
5182272 |
T |
|
| Q |
205 |
aagtgctcaatgaaaatgatccttgcatgtaatttcca |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5182271 |
aagtgctcaatgaaaatgatccttgcatgtaatttcca |
5182234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 6 - 242
Target Start/End: Original strand, 4856863 - 4857097
Alignment:
| Q |
6 |
gtccaagaatatcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaat |
105 |
Q |
| |
|
||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4856863 |
gtccaagaataccaaattatattgatatgaaagaaaagtaggaatgacacttccttcgtccatgtttaggttgcaatttctaagaatgagtgtcttcaat |
4856962 |
T |
|
| Q |
106 |
tgaaatttaggaaaccac-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagcca |
204 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||||||||||| | |||||| ||||||| || ||||||||||||| | ||||||| | |||||||||| |
|
|
| T |
4856963 |
tgaaatttgggaaaccactttgtcttttcagtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattagcca |
4857059 |
T |
|
| Q |
205 |
aagtgctcaatgaaaatgatccttgcatgtaatttcca |
242 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4857060 |
aagtggtcaatgaaaatgatccttgcatgtaatttcca |
4857097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 5214021 - 5213794
Alignment:
| Q |
13 |
aatatcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatt |
112 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5214021 |
aatatcaaactatattgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttctaagaatgagtgtcttcaattgaaatt |
5213922 |
T |
|
| Q |
113 |
taggaaaccac-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgct |
211 |
Q |
| |
|
| || |||||| |||| |||||||||||||||| | | ||| ||| ||| ||||||||||||||| | | |||||| | ||||||||||||||||| |
|
|
| T |
5213921 |
tgggtaaccactttgtcttttcagtttcaatgtttgcaccaatgc---tttgtgatgaaatatatagatgctggagattggagtgattagccaaagtgct |
5213825 |
T |
|
| Q |
212 |
caatgaaaatgatccttgcatgtaatttcca |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
5213824 |
caatgaaaatgatccttgcatgtaatttcca |
5213794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 4842673 - 4842751
Alignment:
| Q |
235 |
aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagc |
313 |
Q |
| |
|
||||||||| ||||| ||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4842673 |
aatttccaccgaacagattatggctaaggtcaagaattctgaggtttgttaagttacttaaacactcaggaagtttagc |
4842751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 5172852 - 5172774
Alignment:
| Q |
235 |
aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagc |
313 |
Q |
| |
|
||||||||||||| | ||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5172852 |
aatttccactgaatagattatggctaaggtcaagaattctgaggtttgttaagttacttaaacactcaggaagtttagc |
5172774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 5159934 - 5159857
Alignment:
| Q |
237 |
tttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagca |
314 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5159934 |
tttccactgaacagattattactaagttcaagaactctgaggtttgttaagttgcttaaacactcaggaaatttagca |
5159857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 5182184 - 5182105
Alignment:
| Q |
235 |
aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagca |
314 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||| ||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5182184 |
aatttccactgaacagattattactaagttcaagaactctaaggtttgttaagttgcttaaacactctggaagtttagca |
5182105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 5195578 - 5195499
Alignment:
| Q |
235 |
aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagca |
314 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
5195578 |
aatttccactgaacagattattactaagttcaagaactctgaggtttgttaagttgcttaaacaatctggaagtttagca |
5195499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 152
Target Start/End: Complemental strand, 7142402 - 7142256
Alignment:
| Q |
6 |
gtccaagaatatcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaat |
105 |
Q |
| |
|
|||||||||| |||||| | |||||| |||| |||| ||||||||||| ||||||||||| ||||| ||||||||||| ||| || |||| | | | |
|
|
| T |
7142402 |
gtccaagaatgccaaattatgttgatatgaaaaaaaactaggaatgacatttcctttgtccatgttttggttgcaatttttaa-cataagtgtatgtagt |
7142304 |
T |
|
| Q |
106 |
tgaaatttaggaaaccac-ttgttttttcagtttcaatgtgtactcca |
152 |
Q |
| |
|
|||||| ||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
7142303 |
tgaaatctaggaaaccactttgtattttcagtttcaacgtgtactcca |
7142256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 5213744 - 5213670
Alignment:
| Q |
235 |
aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtt |
309 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||||||||| ||||||| |
|
|
| T |
5213744 |
aatttccactgaacaaattatagctaagttcaagaacattcaggtttgttaagttgcttaaacactcgggaagtt |
5213670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 5202885 - 5202773
Alignment:
| Q |
124 |
ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatga |
223 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||| | | || |||||||||||| || |||| |||| ||||||||||||||||| | |||||||| |
|
|
| T |
5202885 |
ttgttttttaagtttcaatgtgttctccaatgctttct---gaggaaatatatagatcctgaagcgtgaagtgattagccaaagtgcttactgaaaatgg |
5202789 |
T |
|
| Q |
224 |
tccttgcatgtaattt |
239 |
Q |
| |
|
||||||| ||| |||| |
|
|
| T |
5202788 |
tccttgcgtgtgattt |
5202773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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