View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1491_low_4 (Length: 269)
Name: NF1491_low_4
Description: NF1491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1491_low_4 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 7e-58; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 30151095 - 30150938
Alignment:
| Q |
16 |
aagaaactggctttttctcaaactcatcatttgaaaccaatgacataacagtttgtactaaacctcttagctgtttttccaatcaaacataatgatatac |
115 |
Q |
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| T |
30151095 |
aagaaactggttttttctcaaactcatcatttgaaaccaatgatataacagtttgtactaaacctcttagctgcttttccaatcaaacagaatgataaac |
30150996 |
T |
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| Q |
116 |
actcataaagaattcagttaacagagattgggagggataaacatgcagctgcattttt |
173 |
Q |
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| T |
30150995 |
acgcacaaaaaattcagttaacagaaattgggagggataaacatgcaactgctttttt |
30150938 |
T |
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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 14960509 - 14960435
Alignment:
| Q |
98 |
tcaaacataatgatatacactcataaagaattcagttaacagagattgggagggataaacatgcagctgcatttt |
172 |
Q |
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| T |
14960509 |
tcaaacacaatgatatgcactcataaagaattcagttaacagggattgggagggatacatatgcaactgcatttt |
14960435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 29948604 - 29948656
Alignment:
| Q |
97 |
atcaaacataatgatatacactcataaagaattcagttaacagagattgggag |
149 |
Q |
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| T |
29948604 |
atcaaacagaatgatgaacactcatacagaattcagttaacagaaattgggag |
29948656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 9783633 - 9783481
Alignment:
| Q |
19 |
aaactggctttttctcaaactcatcatttgaaaccaatgacataacagtttgtactaaacctcttagctgtttttccaatcaaacataatgatatacact |
118 |
Q |
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| T |
9783633 |
aaactggctttttctccaactcatcatatgaaaccaatcatataagcattcctactaaacctgttggctgcttttccaatcaaacaaaatgatatacact |
9783534 |
T |
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| Q |
119 |
cataaagaattcagttaacagagattgggagggataaacatgcagctgcattttt |
173 |
Q |
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| T |
9783533 |
ca--aagaattcagttaacagagattgggagggatatatatgccactgcattttt |
9783481 |
T |
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Target: scaffold0186 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 1269 - 1344
Alignment:
| Q |
98 |
tcaaacataatgatatacactcataaagaattcagttaacagagattgggagggataaacatgcagctgcattttt |
173 |
Q |
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| T |
1269 |
tcaaacacaatgatatgcactcataaagaattcagttaacagagattgggagggatacatatgcaactgcattttt |
1344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 9775871 - 9775796
Alignment:
| Q |
98 |
tcaaacataatgatatacactcataaagaattcagttaacagagattgggagggataaacatgcagctgcattttt |
173 |
Q |
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| T |
9775871 |
tcaaacacaatgatatccactcataaagaattcagttaacagagattgggagggatacatatgcaattgcattttt |
9775796 |
T |
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