View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14920_high_21 (Length: 208)
Name: NF14920_high_21
Description: NF14920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14920_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 9e-63; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 36 - 193
Target Start/End: Original strand, 31117144 - 31117303
Alignment:
| Q |
36 |
taatacttatggtcgagcaaaactaatccaatttattcttgctgactaaaatgacaaaagtcaatgaacaaatacaatgccacacatgtattatcttaaa |
135 |
Q |
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| T |
31117144 |
taatacttatggtcgagcaaaactaatccaatttattcttgctgactaaaatgacaaaagtcaatgaacaaatacaatgccacacatgtattatcttaaa |
31117243 |
T |
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| Q |
136 |
atcgattattat--nnnnnnnnnttgttttactttaaaaaacttaaataaacgacctatg |
193 |
Q |
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| T |
31117244 |
atcgattattataaaaaaaacaattgttttactttaaaaaacttaaataaacgacctatg |
31117303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 36 - 189
Target Start/End: Original strand, 31117508 - 31117663
Alignment:
| Q |
36 |
taatacttatggtcgagcaaaactaatccaatttattcttgctgactaaaatgacaaaagtcaatgaac-aaatacaatgccacacatgtattatcttaa |
134 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| ||||||| ||||||||||| |
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| T |
31117508 |
taatacttatggtcaaacaaaactaatccaatttattcttgctgactaaaatgacaaaaatcattgaacaaaatacaatgacacacatttattatcttaa |
31117607 |
T |
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| Q |
135 |
aatcgattattat-nnnnnnnnnttgttttactttaaaaaacttaaataaacgacc |
189 |
Q |
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| T |
31117608 |
aattgattattatagaaaaataattgttttacttaaaaaaacttaaataaacgacc |
31117663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 36 - 193
Target Start/End: Original strand, 31116787 - 31116945
Alignment:
| Q |
36 |
taatacttatggtcgagcaaaa-ctaatccaatttattcttgctgactaaaatgacaaaagtcaatgaacaaatacaatgccacacatgtattatcttaa |
134 |
Q |
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||||||| |||||| ||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||| | ||||||||||||| |
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| T |
31116787 |
taatactcatggtcaagcaaaaactaatccaattaattcttgctgactacaatgacaaaagtcaatgaacaaatacagtgccacgcgtgtattatcttaa |
31116886 |
T |
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| Q |
135 |
aatcgattattatnnnnnnnnnttgttttactttaaaaaacttaaataaacgacctatg |
193 |
Q |
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||| |||||||| |||||||| || |||||||||||||||||||||||| |
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| T |
31116887 |
aattgattattacaaaaaaaaattgttttatcttcaaaaacttaaataaacgacctatg |
31116945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 9147129 - 9147085
Alignment:
| Q |
64 |
caatttattcttgctgactaaaatgacaaaagtcaatgaacaaat |
108 |
Q |
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| T |
9147129 |
caatttattcttgctgactaaaatgagaaaagtcaatgaacaaat |
9147085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 9180018 - 9180062
Alignment:
| Q |
64 |
caatttattcttgctgactaaaatgacaaaagtcaatgaacaaat |
108 |
Q |
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| T |
9180018 |
caatttattcttgctgactaaaatgagaaaagtcaatgaacaaat |
9180062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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