View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14920_low_1 (Length: 604)

Name: NF14920_low_1
Description: NF14920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14920_low_1
NF14920_low_1
[»] chr3 (3 HSPs)
chr3 (18-599)||(52340859-52341431)
chr3 (32-113)||(37065965-37066048)
chr3 (62-115)||(33639651-33639706)
[»] chr6 (4 HSPs)
chr6 (250-522)||(1360863-1361133)
chr6 (538-599)||(1360762-1360823)
chr6 (58-111)||(2480002-2480057)
chr6 (80-112)||(25344845-25344877)
[»] chr5 (6 HSPs)
chr5 (258-592)||(10629570-10629915)
chr5 (542-599)||(17832156-17832213)
chr5 (80-113)||(23237039-23237072)
chr5 (80-113)||(33766483-33766516)
chr5 (80-113)||(42994475-42994508)
chr5 (80-112)||(10555378-10555410)
[»] chr1 (3 HSPs)
chr1 (543-594)||(32162049-32162100)
chr1 (64-111)||(19990276-19990325)
chr1 (538-599)||(30983050-30983111)
[»] chr8 (1 HSPs)
chr8 (543-599)||(4451273-4451329)
[»] chr2 (1 HSPs)
chr2 (59-113)||(34238815-34238871)
[»] chr4 (2 HSPs)
chr4 (542-596)||(55359599-55359653)
chr4 (58-111)||(27109766-27109821)
[»] chr7 (5 HSPs)
chr7 (80-113)||(19156221-19156254)
chr7 (80-113)||(20008238-20008271)
chr7 (80-113)||(20755620-20755653)
chr7 (543-587)||(10983266-10983310)
chr7 (80-112)||(20009105-20009137)


Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 599
Target Start/End: Complemental strand, 52341431 - 52340859
Alignment:
Q  18 atgagtctcaattaaaaaccgttagatttaaaagattggggggctaagatttggagtaagtgta--gacttacttttggagtcaatatatccctcctcgt 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||  |||||||| |||||||||||||||| ||||||||    
T  52341431 atgagtctcaattaaaaaccgttcgatttaaaagattggggggctaagatttggagtaattgtatagacttactcttggagtcaatatatctctcctcgt 52341332  T
Q  116 agggtgatagataatgctttataaagnnnnnnnnnnntcaaaagaaattatcacttcttcaccttccttttgcattctctcctttattcaccaggatcat 215  Q
    | |||||||    |||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52341331 atggtgata----atgctttataaagaaaaaaaaaa-tcaaaagaaattatcacttcttcaccttccttttgcattctctcctttattcactaggatcat 52341237  T
Q  216 caaaacaacgattgacccataaattttccgcactg---gccacttataatatttttgtttttaaagcataaatgtaaacctatattttggaggaacgtac 312  Q
    |||||||||||| ||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  52341236 caaaacaacgatggacccataaattttccgcagtgtaggccacttataatatttttgtttttaaagcataaatgtaaacctatattttagaggaacgtac 52341137  T
Q  313 atcataattgttctatgcggtttttcatgtaataaatattgatcgaattcctcattttcaatgccaataaatctataaaagtatctcgtccatagtttgt 412  Q
    |||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52341136 atcataattgttctatgcagtttttcgtgtcataaatattgaacgaattcctcattttcaatgtcaataaatctataaaagtatctcgtccatagtttgt 52341037  T
Q  413 agggacattgtgacatacaagggttggggtttgaaccctgaatttctcacttattcactttcagggagaatatttaatcgctaggctacttgattaaaaa 512  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52341036 agggacattgtgacatacaagggtcagggtttgaaccctgaatttctcacttattcactttcagggtgaatatttaatcgctaggctacttgattaaaaa 52340937  T
Q  513 taaaaactataagagnnnnnnnnnattaaaataaaagtatctattttaatataaataaccaaacaatcatttaaacattcatctctc 599  Q
    ||||||||||              |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  52340936 taaaaactat---------tttttattaaaataaaagtatctattttaatataagtaaccaaacaatcatttaaacattcatctctc 52340859  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 37066048 - 37065965
Alignment:
Q  32 aaaaccgttagatttaaaagattggggggctaagatttggagtaagtgtaga--cttacttttggagtcaatatatccctcctc 113  Q
    |||||||||||||| |||||| |   |||| |||||||||||||||| ||||  |||||| |||||||||| ||||||||||||    
T  37066048 aaaaccgttagattaaaaagaattaagggcaaagatttggagtaagtttagagacttactcttggagtcaaaatatccctcctc 37065965  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 33639651 - 33639706
Alignment:
Q  62 taagatttggagtaagtgt--agacttacttttggagtcaatatatccctcctcgt 115  Q
    |||||| |||||||||| |  ||||||||| |||||||||||||||||||||||||    
T  33639651 taagatctggagtaagtctttagacttactcttggagtcaatatatccctcctcgt 33639706  T

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Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 250 - 522
Target Start/End: Complemental strand, 1361133 - 1360863
Alignment:
Q  250 ggccacttataatatttttgtttttaaagcataaatgtaaacctatattttggaggaacgtacatcataattgttctatgcggtttttcatgtaataaat 349  Q
    |||||| ||||||||||| ||||||||||||| | |||| || | ||||||  || || |||||||  | |||||||||| || ||||||||| |||| |    
T  1361133 ggccacatataatattttagtttttaaagcatgagtgtatacttgtatttttaagaaatgtacatccca-ttgttctatgtgggttttcatgtcataatt 1361035  T
Q  350 attgatcgaattcctcattttcaatgccaataaatctataaaagtatctcgtccatagtttgtagggacattgtgacatacaagggttggggtttgaacc 449  Q
     ||||  || || ||||||||||||||||||||| |||||||| ||||||||||  | || ||||| |||||| || |||||||||| | ||||| ||||    
T  1361034 tttgaatgattttctcattttcaatgccaataaaactataaaa-tatctcgtccgcaattggtaggaacattgcgatatacaagggtcgaggtttaaacc 1360936  T
Q  450 ctgaatttctcacttattcactttcagggagaatatttaatcgctaggctacttgattaaaaataaaaactat 522  Q
    | ||||| ||||| ||||||| || |||| ||||||||| ||  ||  |||||| ||||||||||||||||||    
T  1360935 ccgaattcctcacatattcaccttaagggtgaatatttagtcattaaactacttaattaaaaataaaaactat 1360863  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 599
Target Start/End: Complemental strand, 1360823 - 1360762
Alignment:
Q  538 ttaaaataaaagtatctattttaatataaataaccaaacaatcatttaaacattcatctctc 599  Q
    |||| |||||||| |||||||  |||||| |||||||||||| ||||||| |||||||||||    
T  1360823 ttaatataaaagtgtctatttctatataagtaaccaaacaattatttaaatattcatctctc 1360762  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 2480002 - 2480057
Alignment:
Q  58 gggctaagatttggagtaagtgtag--acttacttttggagtcaatatatccctcc 111  Q
    ||||||||||||||||||| | ||   ||||||| |||||||||||||||||||||    
T  2480002 gggctaagatttggagtaactttaagcacttactcttggagtcaatatatccctcc 2480057  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 25344877 - 25344845
Alignment:
Q  80 tagacttacttttggagtcaatatatccctcct 112  Q
    |||||||||| ||||||||||||||||||||||    
T  25344877 tagacttactcttggagtcaatatatccctcct 25344845  T

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Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 258 - 592
Target Start/End: Complemental strand, 10629915 - 10629570
Alignment:
Q  258 ataatatttttgtttttaaagcataaatgtaaacctatattttggaggaacgtacatcataattgttctatgcggtttttcatgtaataaatattgatcg 357  Q
    |||||||||| ||||| |||||||||||||| || | ||||||  |||||   | || ||||||||||| ||  ||||||||||| ||||||||||| |     
T  10629915 ataatattttagttttaaaagcataaatgtatacgtgtatttttaaggaatagatattataattgttctttgatgtttttcatgttataaatattgaac- 10629817  T
Q  358 aattcctcattttcaatgccaataaatctataaaagtatctcgtccatagtttgtagggacattgtgacatacaagggttggggtttgaaccctgaattt 457  Q
    | |||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||||| || ||| |||||| || | |||||||  |||||     
T  10629816 atttcctcattttcaatgccaataaaactataaaagtatctcctccacagtttctagggacattgcgatatataagggtcggaggttgaacctcgaattc 10629717  T
Q  458 ctcacttattcact--------ttcagggagaatatttaatcgctaggctacttgattaaaaataaaaactataag--agnnnnnnnnnattaaaataaa 547  Q
     |||||| ||||||        || |||  ||||||||| ||  |||| |||||||||||||||||||||||| ||              |||| |||||    
T  10629716 ttcacttgttcactttaaatccttaaggatgaatatttagtcattaggttacttgattaaaaataaaaactatgagtttttttttttttgttaatataaa 10629617  T
Q  548 agtatctattttaatataaa--taaccaaacaatcatttaaacattc 592  Q
    ||||||||||| ||||||||  |||||||||||||||||||||||||    
T  10629616 agtatctatttcaatataaaagtaaccaaacaatcatttaaacattc 10629570  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 599
Target Start/End: Complemental strand, 17832213 - 17832156
Alignment:
Q  542 aataaaagtatctattttaatataaataaccaaacaatcatttaaacattcatctctc 599  Q
    ||||||| ||||  ||||||||||| |||| ||||||||||||||  |||||||||||    
T  17832213 aataaaaatatcacttttaatataagtaactaaacaatcatttaattattcatctctc 17832156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 23237072 - 23237039
Alignment:
Q  80 tagacttacttttggagtcaatatatccctcctc 113  Q
    |||||||||| |||||||||||||||||||||||    
T  23237072 tagacttactcttggagtcaatatatccctcctc 23237039  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 33766516 - 33766483
Alignment:
Q  80 tagacttacttttggagtcaatatatccctcctc 113  Q
    |||||||||| |||||||||||||||||||||||    
T  33766516 tagacttactcttggagtcaatatatccctcctc 33766483  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 42994508 - 42994475
Alignment:
Q  80 tagacttacttttggagtcaatatatccctcctc 113  Q
    |||||||||| |||||||||||||||||||||||    
T  42994508 tagacttactcttggagtcaatatatccctcctc 42994475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 10555410 - 10555378
Alignment:
Q  80 tagacttacttttggagtcaatatatccctcct 112  Q
    |||||||||| ||||||||||||||||||||||    
T  10555410 tagacttactcttggagtcaatatatccctcct 10555378  T

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Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 543 - 594
Target Start/End: Complemental strand, 32162100 - 32162049
Alignment:
Q  543 ataaaagtatctattttaatataaataaccaaacaatcatttaaacattcat 594  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  32162100 ataaaagtatctcttttaatataaataatcaaacaatcatttaaacattcat 32162049  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 19990325 - 19990276
Alignment:
Q  64 agatttggagtaagtgt--agacttacttttggagtcaatatatccctcc 111  Q
    ||||||||||||||| |  ||||||||| |||||||||||||||||||||    
T  19990325 agatttggagtaagtctttagacttactcttggagtcaatatatccctcc 19990276  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 599
Target Start/End: Complemental strand, 30983111 - 30983050
Alignment:
Q  538 ttaaaataaaagtatctattttaatataaataaccaaacaatcatttaaacattcatctctc 599  Q
    |||| |||||||||| ||||| ||||||| |||| ||| |||||||||||  ||||||||||    
T  30983111 ttaatataaaagtatttatttcaatataactaacgaaataatcatttaaaggttcatctctc 30983050  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 543 - 599
Target Start/End: Original strand, 4451273 - 4451329
Alignment:
Q  543 ataaaagtatctattttaatataaataaccaaacaatcatttaaacattcatctctc 599  Q
    |||||||||| |||||||| || ||||| ||||||||||||||||| ||||||||||    
T  4451273 ataaaagtatttattttaacatgaataatcaaacaatcatttaaactttcatctctc 4451329  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 34238871 - 34238815
Alignment:
Q  59 ggctaagatttggagtaagtgta--gacttacttttggagtcaatatatccctcctc 113  Q
    |||||||||||||||||||| ||  ||||||||||||||||||| ||||| ||||||    
T  34238871 ggctaagatttggagtaagtctatagacttacttttggagtcaaaatatctctcctc 34238815  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 542 - 596
Target Start/End: Complemental strand, 55359653 - 55359599
Alignment:
Q  542 aataaaagtatctattttaatataaataaccaaacaatcatttaaacattcatct 596  Q
    ||||||||||||  ||||||||||  ||||||||||||| ||||| |||||||||    
T  55359653 aataaaagtatcatttttaatatatgtaaccaaacaatcgtttaatcattcatct 55359599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 27109821 - 27109766
Alignment:
Q  58 gggctaagatttggagtaagtgtag--acttacttttggagtcaatatatccctcc 111  Q
    ||||||||||||||||||| | ||   ||||||| |||||||||||||||||||||    
T  27109821 gggctaagatttggagtaactttaagcacttactcttggagtcaatatatccctcc 27109766  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 19156254 - 19156221
Alignment:
Q  80 tagacttacttttggagtcaatatatccctcctc 113  Q
    |||||||||| |||||||||||||||||||||||    
T  19156254 tagacttactcttggagtcaatatatccctcctc 19156221  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 20008271 - 20008238
Alignment:
Q  80 tagacttacttttggagtcaatatatccctcctc 113  Q
    |||||||||| |||||||||||||||||||||||    
T  20008271 tagacttactcttggagtcaatatatccctcctc 20008238  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 20755653 - 20755620
Alignment:
Q  80 tagacttacttttggagtcaatatatccctcctc 113  Q
    |||||||||| |||||||||||||||||||||||    
T  20755653 tagacttactcttggagtcaatatatccctcctc 20755620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 543 - 587
Target Start/End: Complemental strand, 10983310 - 10983266
Alignment:
Q  543 ataaaagtatctattttaatataaataaccaaacaatcatttaaa 587  Q
    ||||||||||| ||||||||||||||||   ||||||||||||||    
T  10983310 ataaaagtatccattttaatataaataattgaacaatcatttaaa 10983266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 20009105 - 20009137
Alignment:
Q  80 tagacttacttttggagtcaatatatccctcct 112  Q
    |||||||||| ||||||||||||||||||||||    
T  20009105 tagacttactcttggagtcaatatatccctcct 20009137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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