View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14920_low_14 (Length: 264)
Name: NF14920_low_14
Description: NF14920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14920_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 49180647 - 49180385
Alignment:
| Q |
1 |
cgcttacaatccagacaaaagtttctttccaaaaaacacagattgatccatgcttgcacaggcgtatctcacaaaactcaccannnnnnnngcaaggatt |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49180647 |
cgcttacaatccagacaaaagtttctttcagaaaaacacagattgatccatgcttgcacaggcgtatctcacaaaactcaccattttttc-gcaaggatt |
49180549 |
T |
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| Q |
101 |
gggcatatcattttatctataataacatgtgaggaaccatgaatagtatgcatagtgaacgaaaggaagatcaaacaaaacacagacacagtctcaaacc |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49180548 |
gggcatatcattttatctgtaataacatgtgaggaaccatgaatagtatgcatagtgaacgaaaggaagatcaaacaaaacacagacacagtctcaaacc |
49180449 |
T |
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| Q |
201 |
tgacttccagccctgtagcagcaaactcatcttatacgtggcatatagccatttttgtaagtca |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49180448 |
tgacttccagccctgtagcagcaaactcatcttatacgtggcatatagccatttttgtaagtca |
49180385 |
T |
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