View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14920_low_15 (Length: 243)
Name: NF14920_low_15
Description: NF14920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14920_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 1277049 - 1277259
Alignment:
| Q |
19 |
tatacgagaaggattttgcaagtaaagaaccaggccctagaatcgtgtttcttccacatcctaatgacaacaacacgattttggtaggttcgtttggatt |
118 |
Q |
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| T |
1277049 |
tatacgagaaggtttttgcaagtaaagaaccaggccctagaatcgtgtttcttccacatcctaatgacaacaacacgattttggtaggttcgtttggatt |
1277148 |
T |
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| Q |
119 |
cacaggaatgaaattaggatttttctcattcaattgttgcatcacttcacttactgcaaccaatgcctgaatta----catacaatttttatagaacatt |
214 |
Q |
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| T |
1277149 |
cacaggaatgaaattaggattcttctcattcaattgttgcatcacttcacttactgcaaccaatgcctgaattacatgcatacaatttttatagaacatt |
1277248 |
T |
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| Q |
215 |
aatgtgcaacc |
225 |
Q |
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| T |
1277249 |
aatgtgcaacc |
1277259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 177
Target Start/End: Original strand, 1196265 - 1196375
Alignment:
| Q |
67 |
ttcttccacatcctaatgacaacaacacgattttggtaggttcgtttggattcacaggaatgaaattaggatttttctcattcaattgttgcatcacttc |
166 |
Q |
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| T |
1196265 |
ttcttccacatcctaatgacaacaacacgaatttggtaggttcgtttggattcacaggtatgaaatcataatttttctcctccaattcttgcatcacttc |
1196364 |
T |
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| Q |
167 |
acttactgcaa |
177 |
Q |
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| T |
1196365 |
attcactgcaa |
1196375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 1224283 - 1224395
Alignment:
| Q |
77 |
tcctaatgacaacaacacgattttggtaggttcgtttggattcacaggaatgaaattaggatttttctcattcaattgttgcatcacttcacttactgca |
176 |
Q |
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| T |
1224283 |
tcctattgacaacaacacgattttggttggcttgtttgccgtcacaggaatgaaattggaattcttctcattcaattcttgtatcacttcactcaccgca |
1224382 |
T |
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| Q |
177 |
accaatgcctgaa |
189 |
Q |
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| T |
1224383 |
accaatgcctgaa |
1224395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 187
Target Start/End: Original strand, 1242517 - 1242636
Alignment:
| Q |
68 |
tcttccacatcctaatgacaacaacacgattttggtaggttcgtttggattcacaggaatgaaattaggatttttctcattcaattgttgcatcacttca |
167 |
Q |
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| T |
1242517 |
tcttccacatcctaatgataacaagaggattttggtaggttgattttcattcacagaaatgaaatcagaattcttttcctctaatagttttatcacttca |
1242616 |
T |
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| Q |
168 |
cttactgcaaccaatgcctg |
187 |
Q |
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| T |
1242617 |
ctcactgcaagcaatgcctg |
1242636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 187
Target Start/End: Original strand, 1253216 - 1253335
Alignment:
| Q |
68 |
tcttccacatcctaatgacaacaacacgattttggtaggttcgtttggattcacaggaatgaaattaggatttttctcattcaattgttgcatcacttca |
167 |
Q |
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| T |
1253216 |
tcttccacatcctaatgataacaagaggattttggtaggttgattttcattcacagaaatgaaatcagaattcttttcctctaatagttttatcacttca |
1253315 |
T |
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| Q |
168 |
cttactgcaaccaatgcctg |
187 |
Q |
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| T |
1253316 |
ctcactgcaagcaatgcctg |
1253335 |
T |
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