View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14920_low_16 (Length: 236)

Name: NF14920_low_16
Description: NF14920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14920_low_16
NF14920_low_16
[»] chr7 (4 HSPs)
chr7 (34-219)||(35446630-35446815)
chr7 (52-88)||(31283516-31283552)
chr7 (52-88)||(36609875-36609911)
chr7 (52-88)||(47297394-47297430)
[»] scaffold0445 (1 HSPs)
scaffold0445 (52-88)||(4828-4864)
[»] scaffold0196 (1 HSPs)
scaffold0196 (52-88)||(8740-8776)
[»] chr8 (6 HSPs)
chr8 (52-88)||(28969653-28969689)
chr8 (53-88)||(24688625-24688660)
chr8 (53-88)||(29684232-29684267)
chr8 (52-88)||(15872102-15872138)
chr8 (52-88)||(25722796-25722832)
chr8 (52-88)||(28205431-28205467)
[»] chr4 (5 HSPs)
chr4 (52-88)||(2133536-2133572)
chr4 (52-88)||(32547384-32547420)
chr4 (52-88)||(23431680-23431716)
chr4 (52-88)||(26054494-26054530)
chr4 (52-88)||(35595638-35595674)
[»] chr2 (8 HSPs)
chr2 (52-88)||(1071188-1071224)
chr2 (51-87)||(1111086-1111122)
chr2 (52-88)||(37609978-37610014)
chr2 (52-88)||(12069441-12069477)
chr2 (52-88)||(13836999-13837035)
chr2 (52-88)||(19813927-19813963)
chr2 (52-88)||(33676765-33676801)
chr2 (56-88)||(42185777-42185809)
[»] chr1 (13 HSPs)
chr1 (52-88)||(34969380-34969416)
chr1 (55-88)||(1531301-1531334)
chr1 (52-88)||(7548431-7548467)
chr1 (52-88)||(8574013-8574049)
chr1 (52-88)||(11344936-11344972)
chr1 (56-88)||(12301013-12301045)
chr1 (52-88)||(13057276-13057312)
chr1 (52-88)||(13303940-13303976)
chr1 (52-88)||(29689399-29689435)
chr1 (52-88)||(29716911-29716947)
chr1 (52-88)||(31528632-31528668)
chr1 (52-88)||(32306929-32306965)
chr1 (52-88)||(52043375-52043411)
[»] chr5 (9 HSPs)
chr5 (52-87)||(28766298-28766333)
chr5 (54-88)||(42027686-42027720)
chr5 (52-88)||(832180-832216)
chr5 (52-88)||(8786744-8786780)
chr5 (52-88)||(17210564-17210600)
chr5 (52-88)||(19650708-19650744)
chr5 (56-88)||(20176521-20176553)
chr5 (56-88)||(24836763-24836795)
chr5 (52-80)||(36907427-36907455)
[»] chr3 (8 HSPs)
chr3 (52-89)||(50098625-50098662)
chr3 (52-88)||(5492523-5492559)
chr3 (52-88)||(12565531-12565567)
chr3 (52-88)||(13155486-13155522)
chr3 (52-88)||(13259930-13259966)
chr3 (52-88)||(14418977-14419013)
chr3 (52-88)||(32509247-32509283)
chr3 (52-88)||(51006168-51006204)
[»] scaffold0021 (1 HSPs)
scaffold0021 (56-88)||(4022-4054)
[»] scaffold0002 (1 HSPs)
scaffold0002 (52-88)||(151466-151502)


Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 34 - 219
Target Start/End: Original strand, 35446630 - 35446815
Alignment:
Q  34 taaatttttaccaatgataatctttattatagaaaaaattgtttaaaagtataatcctaacaacccgtaatccattattccagttttggcctagtaagat 133  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35446630 taaatttttaccaacgacaatctttattatagaaaaaattgtttaaaagtataatcctaacaacccgtaatccattattccagttttggcctagtaagat 35446729  T
Q  134 gatcatctgcagctgcatacaacatgcattgatgaagagcccccgtgcactagagaacgtgctcagatcacaccatatgatcaaac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35446730 gatcatctgcagctgcatacaacatgcattgatgaagagcccccgtgcactagagaacgtgctcagatcacaccatatgatcaaac 35446815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 31283516 - 31283552
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    |||||||||||||||||||||||||||| ||||||||    
T  31283516 aatctttattatagaaaaaattgtttaatagtataat 31283552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 36609875 - 36609911
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||||||||||||  |||||||    
T  36609875 aatctttattatagaaaaaattgtttaagggtataat 36609911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 47297430 - 47297394
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  47297430 aatctttattataaaaaaaattgtttaagagtataat 47297394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 4864 - 4828
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||||||||||||| |||||||    
T  4864 aatctttattatagaaaaaattgtttaaatgtataat 4828  T

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Target: scaffold0196 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 8740 - 8776
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||||||||||||| |||||||    
T  8740 aatctttattatagaaaaaattgtttaaaggtataat 8776  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 28969653 - 28969689
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| |||||||||||||||||    
T  28969653 aatctttattatagaaaaagttgtttaaaagtataat 28969689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 24688660 - 24688625
Alignment:
Q  53 atctttattatagaaaaaattgtttaaaagtataat 88  Q
    |||||||||||||||||||||||||||| |||||||    
T  24688660 atctttattatagaaaaaattgtttaaaggtataat 24688625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 29684267 - 29684232
Alignment:
Q  53 atctttattatagaaaaaattgtttaaaagtataat 88  Q
    |||||||||||||||||| |||||||||||||||||    
T  29684267 atctttattatagaaaaagttgtttaaaagtataat 29684232  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 15872102 - 15872138
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  15872102 aatctttattatagaaaaagttgtttaaaggtataat 15872138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 25722832 - 25722796
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  25722832 aatctttattatagaaaaagttgtttaaaggtataat 25722796  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 28205467 - 28205431
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  28205467 aatctttattatagaaaatattgttttaaagtataat 28205431  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 2133572 - 2133536
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    |||||||||||||||||||||||||||| ||||||||    
T  2133572 aatctttattatagaaaaaattgtttaagagtataat 2133536  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 32547384 - 32547420
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    |||||||||||||||||||||||||||| ||||||||    
T  32547384 aatctttattatagaaaaaattgtttaagagtataat 32547420  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 23431680 - 23431716
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||||||||||||  |||||||    
T  23431680 aatctttattatagaaaaaattgtttaagggtataat 23431716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 26054494 - 26054530
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| || ||||||||||||||    
T  26054494 aatctttattatagaaaaagttatttaaaagtataat 26054530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 35595638 - 35595674
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  35595638 aatctttattatagaaaaaactgtttaagagtataat 35595674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 1071188 - 1071224
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    |||||||||||||||||||||||||||| ||||||||    
T  1071188 aatctttattatagaaaaaattgtttaagagtataat 1071224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 1111122 - 1111086
Alignment:
Q  51 taatctttattatagaaaaaattgtttaaaagtataa 87  Q
    ||||||||||||||||||||||||||||| |||||||    
T  1111122 taatctttattatagaaaaaattgtttaagagtataa 1111086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 37610014 - 37609978
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| |||||||||||||||||    
T  37610014 aatctttattatagaaaaagttgtttaaaagtataat 37609978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 12069477 - 12069441
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  12069477 aatctttattatagaaaaagttgtttaagagtataat 12069441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 13836999 - 13837035
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||||||||| || ||||||||    
T  13836999 aatctttattatagaaaaaattgttcaagagtataat 13837035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 19813927 - 19813963
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||||||||||||  |||||||    
T  19813927 aatctttattatagaaaaaattgtttaagtgtataat 19813963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 33676765 - 33676801
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||||||||||||  |||||||    
T  33676765 aatctttattatagaaaaaattgtttaagggtataat 33676801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 42185809 - 42185777
Alignment:
Q  56 tttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||||||||| |||||||    
T  42185809 tttattatagaaaaaattgtttaaatgtataat 42185777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 34969380 - 34969416
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    |||||||||||||||||||||||||||| ||||||||    
T  34969380 aatctttattatagaaaaaattgtttaagagtataat 34969416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 1531301 - 1531334
Alignment:
Q  55 ctttattatagaaaaaattgtttaaaagtataat 88  Q
    |||||||||||||||||||||||||| |||||||    
T  1531301 ctttattatagaaaaaattgtttaaaggtataat 1531334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 7548467 - 7548431
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||||||||||||  |||||||    
T  7548467 aatctttattatagaaaaaattgtttaagggtataat 7548431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 8574049 - 8574013
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  8574049 aatctttattatagaaaaagttgtttaagagtataat 8574013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 11344972 - 11344936
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  11344972 aatctttattatagaaaaagttgtttaagagtataat 11344936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 12301045 - 12301013
Alignment:
Q  56 tttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||| |||||||||||||||||    
T  12301045 tttattatagaaaaagttgtttaaaagtataat 12301013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 13057276 - 13057312
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    |||||||||||||||||||||| |||||| |||||||    
T  13057276 aatctttattatagaaaaaattatttaaaggtataat 13057312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 13303976 - 13303940
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  13303976 aatctttattatagaaaaagttgtttaaaggtataat 13303940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 29689435 - 29689399
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||||||||||||  |||||||    
T  29689435 aatctttattatagaaaaaattgtttaagggtataat 29689399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 29716947 - 29716911
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||||||||||||  |||||||    
T  29716947 aatctttattatagaaaaaattgtttaagggtataat 29716911  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 31528668 - 31528632
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  31528668 aatctttattatagaaaaagttgtttaaatgtataat 31528632  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 32306965 - 32306929
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||||||||||||  |||||||    
T  32306965 aatctttattatagaaaaaattgtttaagggtataat 32306929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 52043411 - 52043375
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  52043411 aatctttattatagaaaaagttgtttaaaggtataat 52043375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 28766333 - 28766298
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataa 87  Q
    |||||||||||||||||||||||||||| |||||||    
T  28766333 aatctttattatagaaaaaattgtttaagagtataa 28766298  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 42027686 - 42027720
Alignment:
Q  54 tctttattatagaaaaaattgtttaaaagtataat 88  Q
    |||||||||||||||||||||||||| ||||||||    
T  42027686 tctttattatagaaaaaattgtttaagagtataat 42027720  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 832216 - 832180
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  832216 aatctttattatagaaaaagttgtttaaaggtataat 832180  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 8786744 - 8786780
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  8786744 aatctttattatagaaaaagttgtttaaaggtataat 8786780  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 17210600 - 17210564
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||||||||||||  |||||||    
T  17210600 aatctttattatagaaaaaattgtttaagggtataat 17210564  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 19650744 - 19650708
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  19650744 aatctttattatagaaaaagttgtttaaaggtataat 19650708  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 20176521 - 20176553
Alignment:
Q  56 tttattatagaaaaaattgtttaaaagtataat 88  Q
    |||||||||||||||||| ||||||||||||||    
T  20176521 tttattatagaaaaaattatttaaaagtataat 20176553  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 24836795 - 24836763
Alignment:
Q  56 tttattatagaaaaaattgtttaaaagtataat 88  Q
    |||||||||||||||||||||||| ||||||||    
T  24836795 tttattatagaaaaaattgtttaagagtataat 24836763  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 36907455 - 36907427
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaa 80  Q
    |||||||||||||||||||||||||||||    
T  36907455 aatctttattatagaaaaaattgtttaaa 36907427  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 50098625 - 50098662
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataatc 89  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  50098625 aatcattattatagaaaaaattgttttaaagtataatc 50098662  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 5492523 - 5492559
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  5492523 aatctttattatagaaaaagttgtttaaaggtataat 5492559  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 12565531 - 12565567
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  12565531 aatctttattatagaaaaagttgtttaaaggtataat 12565567  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 13155486 - 13155522
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  13155486 aatctttattatagaaaaagttgtttaaaggtataat 13155522  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 13259930 - 13259966
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  13259930 aatctttattatagaaaaagttgtttaaaggtataat 13259966  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 14419013 - 14418977
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||||||||||||  |||||||    
T  14419013 aatctttattatagaaaaaattgtttaagggtataat 14418977  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 32509283 - 32509247
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  32509283 aatctttattatagaaaaatttgtttaaatgtataat 32509247  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 51006204 - 51006168
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  51006204 aatctttattatagaaaaaattatttaagagtataat 51006168  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 4022 - 4054
Alignment:
Q  56 tttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||| |||||||||||||||||    
T  4022 tttattatagaaaaagttgtttaaaagtataat 4054  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 151502 - 151466
Alignment:
Q  52 aatctttattatagaaaaaattgtttaaaagtataat 88  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  151502 aatctttattatagaaaaagttgtttaaaggtataat 151466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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