View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14920_low_2 (Length: 427)
Name: NF14920_low_2
Description: NF14920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14920_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 15 - 416
Target Start/End: Complemental strand, 46768447 - 46768046
Alignment:
| Q |
15 |
aaatacagcatccaatcatgaaagcaaatcatgaacaaaacataacataaactatagtaagtgactgactgagaggaaatttaaaatttctcaaatttca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46768447 |
aaatacagcatccaatcatgaaagcaaatcatgaacaaaacataacataaactatagtaagtgactgactgagaggaaatttcaaatttctcaaatttca |
46768348 |
T |
|
| Q |
115 |
ggtatgccgttcatggatcacaaagggttcagtgatcatcatcaagggaaacgtgtgatgacggtggagcaattcaagttatggttgaagacaacatttg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46768347 |
ggtatgccgttcatggatcacaaagggttcagtgatcatcatcaagggaaacgtgtgatgacggtggagcaattcaagttatggttgaagacaacatttg |
46768248 |
T |
|
| Q |
215 |
acacaaaaaatgatggcaaaatcagcaaagaggaactgcgacatgctgtgcgccttacaagaggactccttgtctcttggagtatatgtccagactttta |
314 |
Q |
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| T |
46768247 |
acacaaaaaatgatggcaaaatcagcaaagaggaactgcgacatgctgtgcgccttacaagaggactccttgtctcttggagtatatgtccagactttta |
46768148 |
T |
|
| Q |
315 |
cgctgcagacaccaatcataacggtttcattgatgacaatgaattcaaaaaccttgtccactttgcagacaagcatttcaatgtcaaaatcaaacagtcc |
414 |
Q |
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| T |
46768147 |
cgctgcagacaccaatcataacggtttcattgatgacaatgaattcaaaaaccttgtccactttgcagacaagcatttcaatgtcaaaatcaaacagtcc |
46768048 |
T |
|
| Q |
415 |
ta |
416 |
Q |
| |
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|| |
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| T |
46768047 |
ta |
46768046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 93 - 406
Target Start/End: Complemental strand, 46773149 - 46772839
Alignment:
| Q |
93 |
atttaaaatttctcaaatttcaggtatgccgttcatggatcacaaagggttcagtgatcatcatcaagggaaacgtgtgatgacggtggagcaattcaag |
192 |
Q |
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|||| ||||||||||||||||||||||| |||||||||| ||||||||||||| || ||||||| || || |||||||||||||||||||||||||| |
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| T |
46773149 |
atttcaaatttctcaaatttcaggtatggcgttcatggagcacaaagggttcaatggtcatcat---ggaaagcgtgtgatgacggtggagcaattcaaa |
46773053 |
T |
|
| Q |
193 |
ttatggttgaagacaacatttgacacaaaaaatgatggcaaaatcagcaaagaggaactgcgacatgctgtgcgccttacaagaggactccttgtctctt |
292 |
Q |
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|||||||||||||| | ||||||||||| |||||| | ||| ||||||||||||||||||||||||||||||||| | ||||||||| ||| |||| |
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| T |
46773052 |
ctatggttgaagacagcgtttgacacaaacggtgatggaagaatgagcaaagaggaactgcgacatgctgtgcgccttgctagaggactctttgcatctt |
46772953 |
T |
|
| Q |
293 |
ggagtatatg-tccagacttttacgctgcagacaccaatcataacggtttcattgatgacaatgaattcaaaaaccttgtccactttgcagacaagcatt |
391 |
Q |
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||||| | || | ||||||| | ||||||| |||| || ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| |
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| T |
46772952 |
ggagt-tgtgatacagacttcaagtttgcagacgccaaccacaacggtttcattgatgaaaatgaagtcagaaaccttgtccactttgcagacaagcatt |
46772854 |
T |
|
| Q |
392 |
tcaatgtcaaaatca |
406 |
Q |
| |
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||||||||||||||| |
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| T |
46772853 |
tcaatgtcaaaatca |
46772839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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