View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14920_low_20 (Length: 227)
Name: NF14920_low_20
Description: NF14920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14920_low_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 39 - 227
Target Start/End: Original strand, 36822246 - 36822435
Alignment:
| Q |
39 |
ttaaatcactgaattgatgcagaatgataaaaagaacaaaaaccgtaatttaaatgttatatattnnnnnnnnnnnnnn-ttgttggtttgaaaaagtga |
137 |
Q |
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| T |
36822246 |
ttaaatcactgaattgatgcagaatgataaaaagaacaaaaaccgtaatttaaatgttatatattaaaaaaataaaaaaattgttggtttgaaaaagtaa |
36822345 |
T |
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| Q |
138 |
cctgtgaagtgatggagaatcggagaagaagagcaaggaaaaggacgaaaagggcaaaaccggaaatcggagaagttactagtgtcttta |
227 |
Q |
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| T |
36822346 |
cctgtgaagtgatggagaatcggagaagaagagcaaggaaaaggacgaaaagggcaaaaccggaaatcggagaagttactagtgtcttta |
36822435 |
T |
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