View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14920_low_23 (Length: 206)

Name: NF14920_low_23
Description: NF14920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14920_low_23
NF14920_low_23
[»] chr7 (3 HSPs)
chr7 (13-189)||(38313971-38314147)
chr7 (54-139)||(38276119-38276204)
chr7 (54-139)||(38272406-38272491)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 38313971 - 38314147
Alignment:
Q  13 caaaggcacaactcaatccaacgggaaaagccatagtgactgtgaaaatcaggaggaggaagtaattgagagggtgcttgttgtgataatagtaaagtgg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38313971 caaaggcacaactcaatccaacgggaaaagccatagtgactgtgaaaatcaggaggaggaagtaattgagagggtgcttgttgtgataatagtaaagtgg 38314070  T
Q  113 acataatgctgcaaaattaaacaaataagagtgttacaaaatacaatcacataaacaatagaccaaatacctattgt 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38314071 acataatgctgcaaaattaaacaaataagagtgttacaaaatacaatcacataaacaatagaccaaatacctattgt 38314147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 38276119 - 38276204
Alignment:
Q  54 gtgaaaatcaggaggaggaagtaattgagagggtgcttgttgtgataatagtaaagtggacataatgctgcaaaattaaacaaata 139  Q
    |||||||| ||||||||||||| ||| |||||||||||||| |||||  |||| |||||||||||  ||||||||| |||||||||    
T  38276119 gtgaaaattaggaggaggaagtgattaagagggtgcttgttatgataccagtatagtggacataaaactgcaaaatgaaacaaata 38276204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 38272406 - 38272491
Alignment:
Q  54 gtgaaaatcaggaggaggaagtaattgagagggtgcttgttgtgataatagtaaagtggacataatgctgcaaaattaaacaaata 139  Q
    |||||||| ||||||||||| |||||||||||||||||||  ||||||   || ||||||||| ||||||||||||  ||||||||    
T  38272406 gtgaaaattaggaggaggaaataattgagagggtgcttgtgatgataagcatatagtggacatgatgctgcaaaatagaacaaata 38272491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University