View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14920_low_3 (Length: 401)
Name: NF14920_low_3
Description: NF14920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14920_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 29 - 392
Target Start/End: Original strand, 52824040 - 52824403
Alignment:
| Q |
29 |
tttgtttattgtcaggaagatagagcgattgtgtgcaaagagtgtgatttgaaggttcatggtgtcaacgaacacaccaagaagcataataggtttcttc |
128 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52824040 |
tttgttttttgtcaggaagatagagcgattgtgtgcaaagagtgtgatttgaaggttcacggtgtcaacgaacacaccaagaagcataataggtttcttc |
52824139 |
T |
|
| Q |
129 |
taagtgggatcaagctgcactctcctgctcctcctcccactcttcatgaagaaactggtaattttactatatctgagtacttgataaacactatcccagg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52824140 |
taagtgggatcaagctgcactctcctgctcctcctcccactcttcatgaagaaactggtaattttactatatctgagtacttgataaacactatcccagg |
52824239 |
T |
|
| Q |
229 |
ttggaagtttgaagatttccttgattccccttcttcttctgttccctctcatgaactacaacaccagaatcatatagtgcatgatgatgctaattatcat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52824240 |
ttggaagtttgaagatttccttgattccccttcttcttctgttccctctcatgaactacaacaccagaatcatatagtgcatgatgatgctaattatcat |
52824339 |
T |
|
| Q |
329 |
attcatgaggaaaatattctggtttctttctctagcgagagcatgcgtaggatctgtgctcctc |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
52824340 |
attcatgaggaaaatattctggtttctttctctagcgagagcatgcgtaggatctgtgttcctc |
52824403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34012241 - 34012203
Alignment:
| Q |
1 |
aataaagggtgtctatgtatcattcctctttgtttattg |
39 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
34012241 |
aataaagggtgtctatgtatcattactctttttttattg |
34012203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33149583 - 33149545
Alignment:
| Q |
1 |
aataaagggtgtctatgtatcattcctctttgtttattg |
39 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
33149583 |
aataaagggtgtctatgtatcattactctttttttattg |
33149545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University