View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14920_low_4 (Length: 356)
Name: NF14920_low_4
Description: NF14920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14920_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 38 - 339
Target Start/End: Complemental strand, 45037491 - 45037190
Alignment:
| Q |
38 |
aaatttattcacacaatcaataaatcaaaatatgcattccattacttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcagg |
137 |
Q |
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| T |
45037491 |
aaatttattcacacaatcaataaatcaaaatatgcattgcattacttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcagg |
45037392 |
T |
|
| Q |
138 |
atgacgccataacatagcaagaacaagattgtaaaccaatgggattggcttataaatatccttgaaatacatattcaagaaatcttgttcagcaaaagga |
237 |
Q |
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| T |
45037391 |
gtgacgccataacatagcaagaacaagattgtaaacaaatgggattggcttataaatatccttgaaatacatattcaagaaatcttgttcagcaaaagga |
45037292 |
T |
|
| Q |
238 |
gtaggaggagtaactttaagtgtcttcaaaagatcgtggtaagtatcaatgcttggctcaaacaggaacatgccagcattgaagtaaagtgaaggaggtt |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45037291 |
gtaggaggagtaactttaagtgtcttcaaaagatcgtggtaagtatcaatgcttggctcaaacaggaacatgccagcattgaagtaaagtgaaggaggtt |
45037192 |
T |
|
| Q |
338 |
ga |
339 |
Q |
| |
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|| |
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| T |
45037191 |
ga |
45037190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 215
Target Start/End: Original strand, 45944023 - 45944147
Alignment:
| Q |
91 |
gcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaaccaatgggattggcttat |
190 |
Q |
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| T |
45944023 |
gcacaatagtgaacaacttgaactttctcaagctcaacattctcaggatgacgccacatcatggccaacacaagattgtacacattaggtataggcttgt |
45944122 |
T |
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| Q |
191 |
aaatatccttgaaatacatattcaa |
215 |
Q |
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| T |
45944123 |
atttatccttgaaatacatgttcaa |
45944147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 81 - 222
Target Start/End: Complemental strand, 20395365 - 20395224
Alignment:
| Q |
81 |
acttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaaccaatggg |
180 |
Q |
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||||||||||||||| || |||||||| |||||||| | ||| |||||||| |||||||||||||| ||||| || || |||||||||||||| ||| |
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| T |
20395365 |
acttaccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcaggatgacgccacaacatggccagcacaagattgtaaacattaggg |
20395266 |
T |
|
| Q |
181 |
attggcttataaatatccttgaaatacatattcaagaaatct |
222 |
Q |
| |
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|| |||||||| |||| ||||||||||||||||| |||||| |
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| T |
20395265 |
ataggcttatatttatcattgaaatacatattcaaaaaatct |
20395224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 221
Target Start/End: Original strand, 37686915 - 37687052
Alignment:
| Q |
84 |
taccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaaccaatgggatt |
183 |
Q |
| |
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|||||||||||| || |||||||| |||||||| | ||| |||||||| ||||| |||||||| ||||| || | |||||||| ||||| ||| ||| |
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| T |
37686915 |
taccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcagggtgacgccacaacatggccaacacaagattataaacatttggaatt |
37687014 |
T |
|
| Q |
184 |
ggcttataaatatccttgaaatacatattcaagaaatc |
221 |
Q |
| |
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|||||||| | || |||||||| || ||||| ||||| |
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| T |
37687015 |
ggcttatatttgtctttgaaatatatgttcaaaaaatc |
37687052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 221
Target Start/End: Complemental strand, 37698603 - 37698466
Alignment:
| Q |
84 |
taccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaaccaatgggatt |
183 |
Q |
| |
|
|||||||||||| || |||||||| |||||||| | ||| |||||||| ||||| |||||||| ||||| || | |||||||| ||||| ||| ||| |
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| T |
37698603 |
taccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcagggtgacgccacaacatggccaacacaagattataaacatttggaatt |
37698504 |
T |
|
| Q |
184 |
ggcttataaatatccttgaaatacatattcaagaaatc |
221 |
Q |
| |
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|||||||| | || |||||||| || ||||| ||||| |
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| T |
37698503 |
ggcttatatttgtctttgaaatatatgttcaaaaaatc |
37698466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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