View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14920_low_5 (Length: 355)
Name: NF14920_low_5
Description: NF14920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14920_low_5 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 22441976 - 22441622
Alignment:
| Q |
1 |
tccatcactggaacttatgcttctgccggcaccttaattagtcagtactatatgattatgataattattatttactattcaccttactcatacactccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22441976 |
tccatcactggaacttatgcttctgctggcaccttaattagtcagtactatatgattatgataattattatttactattcaccttactcatacactccta |
22441877 |
T |
|
| Q |
101 |
atcattaattcaacaatattttgtttgttcaaggttttctgcaatgtgctgcattcttggaagttatacacggtgccattggtaggttttacactgtcat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22441876 |
atcattaattcaacaatattttgtttgttcaaggttttctgcaatgtgctgcattcttggaagttatacacggtgccattggtaggttttacactatcat |
22441777 |
T |
|
| Q |
201 |
tcattcaattaccttctaactgttatatgatttatttattgttgttgaaatttttgtcacttctcatgaaatgaatttcaggactggtgccaagcggagc |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22441776 |
tcattgaattaccttctaactgttatatgatttatttattgttgttgaaatttttgtcactactcatgaaatgaatttcaggactagtgccaagcggagc |
22441677 |
T |
|
| Q |
301 |
gttgcttcctttgatgcaatggggaggaaggacccactttgtccttgccattgtt |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22441676 |
gttgcttcctttgatgcaatggggaggaaggactcactttgtccttgccattgtt |
22441622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University