View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14921_low_1 (Length: 624)
Name: NF14921_low_1
Description: NF14921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14921_low_1 |
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| [»] scaffold0519 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 330 - 607
Target Start/End: Original strand, 36883000 - 36883277
Alignment:
| Q |
330 |
atataaaagtttgagtattgtgcattactcaaattttatctcttccattgaaaatatttaaatatatatgttggttcatttgcnnnnnnnnnnnnacctt |
429 |
Q |
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| T |
36883000 |
atataaaagtttgagtattgtgcactactcaaattttatctcttccaatgaaaatgtttgaatatatatgttggttcatttgctttttcttttttacctt |
36883099 |
T |
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| Q |
430 |
ggagcagtatatcaaaagtcttgtaccacaacacttctactttagaagcaacaacaagggaaaaacatcaagtgaaattttcaagacaacacacgaaaat |
529 |
Q |
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| T |
36883100 |
ggagcagtatatcaaaagccttgtaccacaacacttctactttagaagcaacaacaagggcaaaacatcaagtgaaattttcaagacaacacacgaaaat |
36883199 |
T |
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| Q |
530 |
cttatacaagagagcagcagttggctaaaagacacgtcagaatcctgctccgtcgtatctggccttgtagccggtgtt |
607 |
Q |
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| T |
36883200 |
cttatacaagagagcagcagttggctaaaagacacgtcagaatcctgctccgtcgtatctggccttgtagccggtgtt |
36883277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 36882716 - 36882957
Alignment:
| Q |
1 |
tcgaggacttttggaggggggagcttcggggaatttatttttctttatgatacaaaatcttcttagtttgggagaactcaaaagttg-attgaacaaaga |
99 |
Q |
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| T |
36882716 |
tcgaggactttgggaggggggagctttggggaatttatttttctttataatacaaaatcttcttaatttgggagaacttaaaagttgtactgaacaaaga |
36882815 |
T |
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| Q |
100 |
tttgagagggtttgcagggcttgga-taaattcaaacattaaaaatttaaaatgcctatttactccatta-ttttcaggtgaagaatatgcatgtagttg |
197 |
Q |
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| T |
36882816 |
tttgagagggtttgcagggcttggacaaaattcaaagattaaaaatttaaaatgtctatttactccattacttgtaaagtgaagaatatgcatgtagatg |
36882915 |
T |
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| Q |
198 |
attttagaaacttccatgaagcaaaagttttactaaaatgtt |
239 |
Q |
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| T |
36882916 |
atttgagaaacttccatgaagcaaaagttttactaaaatgtt |
36882957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 428 - 607
Target Start/End: Original strand, 36893101 - 36893280
Alignment:
| Q |
428 |
ttggagcagtatatcaaaagtcttgtaccacaacacttctactttagaagcaacaacaagggaaaaacatcaagtgaaattttcaagacaacacacgaaa |
527 |
Q |
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| T |
36893101 |
ttggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaag |
36893200 |
T |
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| Q |
528 |
atcttatacaagagagcagcagttggctaaaagacacgtcagaatcctgctccgtcgtatctggccttgtagccggtgtt |
607 |
Q |
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| T |
36893201 |
gtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtt |
36893280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0519 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0519
Description:
Target: scaffold0519; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 7481 - 7521
Alignment:
| Q |
22 |
agcttcggggaatttatttttctttatgatacaaaatcttc |
62 |
Q |
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| T |
7481 |
agcttcggggaatttatttttcttcataatacaaaatcttc |
7521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 11229338 - 11229298
Alignment:
| Q |
22 |
agcttcggggaatttatttttctttatgatacaaaatcttc |
62 |
Q |
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| T |
11229338 |
agcttcggggaatttatttttcttcataatacaaaatcttc |
11229298 |
T |
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