View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14921_low_2 (Length: 444)

Name: NF14921_low_2
Description: NF14921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14921_low_2
NF14921_low_2
[»] chr6 (4 HSPs)
chr6 (237-428)||(34847776-34847967)
chr6 (1-188)||(34848016-34848203)
chr6 (1-46)||(6708103-6708148)
chr6 (1-46)||(31079623-31079668)
[»] chr2 (1 HSPs)
chr2 (1-46)||(6124184-6124229)
[»] chr7 (1 HSPs)
chr7 (1-45)||(27398110-27398154)
[»] chr5 (3 HSPs)
chr5 (1-44)||(9792330-9792373)
chr5 (1-46)||(1639844-1639889)
chr5 (7-44)||(32624894-32624931)
[»] chr1 (5 HSPs)
chr1 (7-46)||(9528901-9528940)
chr1 (1-46)||(3426859-3426904)
chr1 (7-44)||(9092547-9092584)
chr1 (1-46)||(36367754-36367799)
chr1 (1-46)||(38948743-38948788)
[»] scaffold0112 (1 HSPs)
scaffold0112 (1-46)||(42127-42172)
[»] chr8 (1 HSPs)
chr8 (1-46)||(28876628-28876673)
[»] chr4 (4 HSPs)
chr4 (1-46)||(5325783-5325828)
chr4 (1-46)||(38492321-38492366)
chr4 (1-46)||(52122931-52122976)
chr4 (1-45)||(3403638-3403682)
[»] chr3 (2 HSPs)
chr3 (1-46)||(37996873-37996918)
chr3 (1-46)||(47642028-47642073)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 5e-97; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 237 - 428
Target Start/End: Complemental strand, 34847967 - 34847776
Alignment:
Q  237 tccatgctaaaactctttttcatggacacacaagaagaagataaatcaagttgaacaccaaaaagtctaactccaacaaaactactacttcctcttaatg 336  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34847967 tccatgctaaaactctttttcatggaaacacaagaagaagataaatcaagttgaacaccaaaaagtctaactccaacaaaactaccacttcctcttaatg 34847868  T
Q  337 aattacatgtccttgaattatgacctatgtttccacaatgtgagcactttctgcccattttttgaaccgacacaaaccttaaccttaaaact 428  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34847867 aattacaagtccttgaattatgacctatgtttccacaatgtgagcactttctgcccattttttgaaccgacacaaaccttaaccttaaaact 34847776  T

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Target: chr6; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 34848203 - 34848016
Alignment:
Q  1 tactttaaaatggatgacgtactgtatcccatgtgtatcttgcacctgatgtcttgataaaatttgaatctaaattaaaaattcacaaatatattagaat 100  Q
    ||||||||||||||||||| ||||||||  ||||||||| |||| | |||||||||||||||||||||||||||||||||||| |||||| ||||| |||    
T  34848203 tactttaaaatggatgacgcactgtatcttatgtgtatcctgcatccgatgtcttgataaaatttgaatctaaattaaaaatttacaaatgtattacaat 34848104  T
Q  101 atatgtaccttttttcctttctggtgtacgaactatgagaccatctgaaagataaccaatagaggctctatcatcaatggttaatctt 188  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34848103 atatgtaccttttttcctttcttgtgtacgaactatgagaccatctgaaagataaccaatagaggctctatcatcaatggttaatctt 34848016  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6708148 - 6708103
Alignment:
Q  1 tactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 46  Q
    |||||||||||||||||| || |||||||| |||||||| ||||||    
T  6708148 tactttaaaatggatgacatattgtatcccctgtgtatcatgcacc 6708103  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31079623 - 31079668
Alignment:
Q  1 tactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 46  Q
    ||||||||||||||||||||| |||||||| || ||||| ||||||    
T  31079623 tactttaaaatggatgacgtattgtatcccctgcgtatcctgcacc 31079668  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6124184 - 6124229
Alignment:
Q  1 tactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 46  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||||    
T  6124184 tactttaaaatggatgacgtattgtatcccctgtgtatcctgcacc 6124229  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27398154 - 27398110
Alignment:
Q  1 tactttaaaatggatgacgtactgtatcccatgtgtatcttgcac 45  Q
    |||||||||||||||||||||||||||||| || ||||| |||||    
T  27398154 tactttaaaatggatgacgtactgtatcccctgcgtatcctgcac 27398110  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9792330 - 9792373
Alignment:
Q  1 tactttaaaatggatgacgtactgtatcccatgtgtatcttgca 44  Q
    |||||||||||||||||||||| ||||||| |||||||| ||||    
T  9792330 tactttaaaatggatgacgtaccgtatcccctgtgtatcctgca 9792373  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1639889 - 1639844
Alignment:
Q  1 tactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 46  Q
    ||||| |||||||||||||||||||||||| || ||||| ||||||    
T  1639889 tacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 1639844  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 32624894 - 32624931
Alignment:
Q  7 aaaatggatgacgtactgtatcccatgtgtatcttgca 44  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  32624894 aaaatggatgacgtaccgtatcccctgtgtatcttgca 32624931  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 9528940 - 9528901
Alignment:
Q  7 aaaatggatgacgtactgtatcccatgtgtatcttgcacc 46  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  9528940 aaaatggatgacgtattgtatcccttgtgtatcttgcacc 9528901  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3426859 - 3426904
Alignment:
Q  1 tactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 46  Q
    ||||||||||||||||||||| |||||||| || ||||| ||||||    
T  3426859 tactttaaaatggatgacgtattgtatcccctgcgtatcctgcacc 3426904  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 9092584 - 9092547
Alignment:
Q  7 aaaatggatgacgtactgtatcccatgtgtatcttgca 44  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  9092584 aaaatggatgacgtactgtatcctatgtgtatcctgca 9092547  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36367799 - 36367754
Alignment:
Q  1 tactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 46  Q
    ||||| |||||||||||||||||||||||| || ||||| ||||||    
T  36367799 tacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 36367754  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38948743 - 38948788
Alignment:
Q  1 tactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 46  Q
    |||||||||||||||||||||| ||||||| || ||||| ||||||    
T  38948743 tactttaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 38948788  T

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Target: scaffold0112 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 42172 - 42127
Alignment:
Q  1 tactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 46  Q
    ||||| |||||||||||||||||||||||| || ||||| ||||||    
T  42172 tacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 42127  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28876673 - 28876628
Alignment:
Q  1 tactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 46  Q
    ||||| |||||||||||||||||||||||| || ||||| ||||||    
T  28876673 tacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 28876628  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5325828 - 5325783
Alignment:
Q  1 tactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 46  Q
    ||||||||||||||||||||| |||||||| || ||||| ||||||    
T  5325828 tactttaaaatggatgacgtattgtatcccctgcgtatcctgcacc 5325783  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38492366 - 38492321
Alignment:
Q  1 tactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 46  Q
    ||||| |||||||||||||||||||||||| || ||||| ||||||    
T  38492366 tacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 38492321  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 52122976 - 52122931
Alignment:
Q  1 tactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 46  Q
    ||||| |||||||||||||||||||||||| || ||||| ||||||    
T  52122976 tacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 52122931  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3403682 - 3403638
Alignment:
Q  1 tactttaaaatggatgacgtactgtatcccatgtgtatcttgcac 45  Q
    ||||| |||||||||||||||| ||||||| |||||||| |||||    
T  3403682 tacttcaaaatggatgacgtaccgtatcccctgtgtatcctgcac 3403638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37996918 - 37996873
Alignment:
Q  1 tactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 46  Q
    |||||||||||||||||||||| ||||||| || ||||| ||||||    
T  37996918 tactttaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 37996873  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 47642028 - 47642073
Alignment:
Q  1 tactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 46  Q
    ||||| |||||||||||||||| |||||||||| ||||| ||||||    
T  47642028 tacttcaaaatggatgacgtaccgtatcccatgcgtatcctgcacc 47642073  T

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