View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14921_low_4 (Length: 351)
Name: NF14921_low_4
Description: NF14921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14921_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 140 - 322
Target Start/End: Complemental strand, 14044102 - 14043925
Alignment:
| Q |
140 |
aaataaggatgtggtaagaataagatgttacactgaacagaaacaagttggctacatagatacaagttgtaaaacaaacattatgtcataactgaggaga |
239 |
Q |
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| T |
14044102 |
aaataaggatgtggtaagaataagatgttatattgaatagaaacaagttgtctacatag-------ttgtacaacaaacattatctcataactgaggaga |
14044010 |
T |
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| Q |
240 |
tgttctgattatagttatgaatttattaag--atacctcttcctaactaaatggagcgaagtaatctgcctgacataattattat |
322 |
Q |
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| T |
14044009 |
ttttctgattttagttatgaatgtatgaagatatatctcttcgtaactaaatgtagctaacaaatcttcctgacgaaattattat |
14043925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 13929855 - 13929767
Alignment:
| Q |
204 |
agttgtaaaacaaacattatgtcataactgaggagatgttctgattatagttatgaatttattaag--atacctcttcctaactaaatg |
290 |
Q |
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| T |
13929855 |
agttgtacaataaacattatctcataactgaggagattttctgattatagttatgaatttatgaagatatatctcttcttaactaaatg |
13929767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 13929921 - 13929861
Alignment:
| Q |
17 |
tatagtgggaaggatatattttggcccaaaatgtggatgactattcatgcttggattgctc |
77 |
Q |
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| T |
13929921 |
tatagtgggaaggatatattttggcccaaaatgtggacgactatccatgtttggattgctc |
13929861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 14039091 - 14039033
Alignment:
| Q |
140 |
aaataaggatgtggtaagaataagatgttacactgaacagaaacaagttggctacatag |
198 |
Q |
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| T |
14039091 |
aaataaggatgtggtaagaataagatgttatattgaatagaaacaagttgtctacatag |
14039033 |
T |
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