View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14921_low_5 (Length: 298)
Name: NF14921_low_5
Description: NF14921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14921_low_5 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 45270760 - 45270480
Alignment:
| Q |
18 |
agaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgctgg |
117 |
Q |
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| T |
45270760 |
agaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgccgg |
45270661 |
T |
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| Q |
118 |
tcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcgtaggttaccaagacactttgtacgttcaaaccaacagg |
217 |
Q |
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| T |
45270660 |
tatgcaagctgtggcatttagaaacataggagatatgtctgctttggtgggttgccatatcgtaggttaccaagacactttgtacgttcaaaccaacagg |
45270561 |
T |
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| Q |
218 |
caattctaccgcaactgtgttatctacggtaccattgacttcatctttggaacatatgctacattgatccaaagctctacc |
298 |
Q |
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| T |
45270560 |
caattctaccgcaactgtgttatctccggtaccattgacttcatctttggaacatctgccaccttgatccaaagctctacc |
45270480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 45293869 - 45293599
Alignment:
| Q |
19 |
gaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgctggt |
118 |
Q |
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| T |
45293869 |
gaagttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaaggcaatgacatttgagaacacagccggtcctgctggt |
45293770 |
T |
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| Q |
119 |
caccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcgtaggttaccaagacactttgtacgttcaaaccaacaggc |
218 |
Q |
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| T |
45293769 |
caccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacactttgtacgttcaaaccaacaggc |
45293670 |
T |
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| Q |
219 |
aattctaccgcaactgtgttatctacggtaccattgacttcatctttggaacatatgctacattgatccaa |
289 |
Q |
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| T |
45293669 |
aattctaccgcaattgtgttatctctggtaccgttgatttcatctttggaacatctgccaccttgatccaa |
45293599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 45302829 - 45302559
Alignment:
| Q |
19 |
gaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgctggt |
118 |
Q |
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| T |
45302829 |
gaagttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaaggcaatgacatttgagaacacagccggtcctgctggt |
45302730 |
T |
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| Q |
119 |
caccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcgtaggttaccaagacactttgtacgttcaaaccaacaggc |
218 |
Q |
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| T |
45302729 |
caccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacactttgtacgttcaaaccaacaggc |
45302630 |
T |
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| Q |
219 |
aattctaccgcaactgtgttatctacggtaccattgacttcatctttggaacatatgctacattgatccaa |
289 |
Q |
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| T |
45302629 |
aattctaccgcaattgtgttatctctggtaccgttgatttcatctttggaacatctgccaccttgatccaa |
45302559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 289
Target Start/End: Complemental strand, 45282525 - 45282259
Alignment:
| Q |
23 |
ttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgctggtcacc |
122 |
Q |
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| T |
45282525 |
ttactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcacc |
45282426 |
T |
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| Q |
123 |
aagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcgtaggttaccaagacactttgtacgttcaaaccaacaggcaatt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||||| || | |
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| T |
45282425 |
aagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcgtgggttaccaagacagcttgtatgttcaaagcaacagacagta |
45282326 |
T |
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| Q |
223 |
ctaccgcaactgtgttatctacggtaccattgacttcatctttggaacatatgctacattgatccaa |
289 |
Q |
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| T |
45282325 |
ctaccgcaattgtcttgtctcgggtaccgttgacttcatctttggatcatctgctaccttgatccaa |
45282259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 23 - 289
Target Start/End: Complemental strand, 45274282 - 45274015
Alignment:
| Q |
23 |
ttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgctggtcacc |
122 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45274282 |
ttactaattaattgattatccatgcgtgcagccaacaccgcaatagggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcacc |
45274183 |
T |
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| Q |
123 |
aagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcgtaggttaccaagacactttgtacgttcaaaccaacaggcaatt |
222 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| ||||||||| | |
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| T |
45274182 |
aagctgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcgtgggttaccaagacagcttgtatgttcaaagcaacaggcagta |
45274083 |
T |
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| Q |
223 |
ctaccgcaactgtgttatctacggt-accattgacttcatctttggaacatatgctacattgatccaa |
289 |
Q |
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||||||||| ||| || ||| ||| ||| ||||||||||||||||| ||| |||||| ||||||||| |
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| T |
45274082 |
ctaccgcaattgtcttgtctctggtaaccgttgacttcatctttggatcatctgctaccttgatccaa |
45274015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 38587643 - 38587600
Alignment:
| Q |
119 |
caccaagctgtggcatttagaaaccaaggagatatgtctgcttt |
162 |
Q |
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| T |
38587643 |
caccaagcagtggcatttagaaaccaaggagacatgtctgcttt |
38587600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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