View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14921_low_6 (Length: 230)

Name: NF14921_low_6
Description: NF14921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14921_low_6
NF14921_low_6
[»] chr3 (11 HSPs)
chr3 (14-212)||(6948285-6948484)
chr3 (15-212)||(6553258-6553457)
chr3 (95-211)||(6737001-6737117)
chr3 (97-212)||(8590739-8590854)
chr3 (95-211)||(6519064-6519180)
chr3 (97-212)||(6478886-6479001)
chr3 (97-211)||(8455665-8455779)
chr3 (153-213)||(8479867-8479927)
chr3 (14-56)||(8590885-8590927)
chr3 (12-49)||(6478807-6478844)
chr3 (21-54)||(8455813-8455846)
[»] scaffold0425 (1 HSPs)
scaffold0425 (14-212)||(6296-6496)
[»] chr4 (1 HSPs)
chr4 (84-134)||(41068269-41068320)


Alignment Details
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 6948484 - 6948285
Alignment:
Q  14 ataattcttgtttcatttaattttacttgactgaaagaacacaattaccttgcagaggtttcaagacttgtgcttcaggct-aatatatcatggcagaat 112  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||| || ||||||||||||||||||| |||||||||||||||| |    
T  6948484 ataattcttgtttcatttaattttacttgacagaaagaacacatttatcttgcagaggctttaagacttgtgcttcaggctcaatatatcatggcagagt 6948385  T
Q  113 tggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttcggttcatatcagaaactacttcagtagttataatgtcgatga 212  Q
    ||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |||  ||||||| ||||||| |||||| | ||||| |||||    
T  6948384 tggtagctggggcatttcttcagtcttcttttcaagtgattattgagaagttggcttctgttggtatcagagactactttagtagtaacaatgttgatga 6948285  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 6553258 - 6553457
Alignment:
Q  15 taattcttgtttcatttaattttacttgactgaaagaacacaattac--cttgcagaggtttcaagacttgtgcttcaggct-aatatatcatggcagaa 111  Q
    ||||| |||||||||| | ||||| ||||  ||||||||||| || |  |||||||||| || ||||||||||||| ||||| || |||||||||||||     
T  6553258 taattattgtttcattca-ttttatttgatagaaagaacacatttccatcttgcagaggctttaagacttgtgctttaggctcaacatatcatggcagag 6553356  T
Q  112 ttggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttcggttcatatcagaaactacttcagtagttataatgtcgatg 211  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||  ||||||| ||||||| |||||| | ||||| ||||    
T  6553357 ttggtagccggggcatttcttcagtcttcctttcaagtgattattgagaagttggcttccgttggtatcagagactactttagtagtaacaatgttgatg 6553456  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 95 - 211
Target Start/End: Complemental strand, 6737117 - 6737001
Alignment:
Q  95 aatatatcatggcagaattggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttcggttcatatcagaaactacttcag 194  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| ||| ||||||||||    
T  6737117 aatatatcatggcagagttggtagctggggcatttcttcagtcttcctttcaagtgattattgagaagttggcttcagttgatattagagactacttcag 6737018  T
Q  195 tagttataatgtcgatg 211  Q
    |||| | ||||| ||||    
T  6737017 tagtaacaatgttgatg 6737001  T

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Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 8590854 - 8590739
Alignment:
Q  97 tatatcatggcagaattggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttcggttcatatcagaaactacttcagta 196  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||| |||| ||| ||     
T  8590854 tatatcatggcagagttggtagctggggcatttcttcagtcttcctttcaagtgattattgagaagttggcttcggttgatatcagagactaattcggtc 8590755  T
Q  197 gttataatgtcgatga 212  Q
    || ||||||| |||||    
T  8590754 gtaataatgttgatga 8590739  T

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Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 95 - 211
Target Start/End: Original strand, 6519064 - 6519180
Alignment:
Q  95 aatatatcatggcagaattggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttcggttcatatcagaaactacttcag 194  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||| || |||||||| ||| ||||||||||    
T  6519064 aatatatcatggcagagttggtagctggggcatttcttcagtcttcctttcaagtgatttttgagaagttggcgtctgttcatattagagactacttcag 6519163  T
Q  195 tagttataatgtcgatg 211  Q
    |||| | ||||| ||||    
T  6519164 tagtgacaatgttgatg 6519180  T

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Target: chr3; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 6478886 - 6479001
Alignment:
Q  97 tatatcatggcagaattggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttcggttcatatcagaaactacttcagta 196  Q
    |||||||||||||| |||||||||||||||||||||||||| || |||||||||||  |||||||||||||||||||| |||| ||| ||||||||||||    
T  6478886 tatatcatggcagagttggtagctggggcatttcttcagtcttcttttcaagtgatttttgagaagttggcttcggttgatattagagactacttcagta 6478985  T
Q  197 gttataatgtcgatga 212  Q
    || | ||||| |||||    
T  6478986 gtaaaaatgttgatga 6479001  T

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Target: chr3; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 97 - 211
Target Start/End: Complemental strand, 8455779 - 8455665
Alignment:
Q  97 tatatcatggcagaattggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttcggttcatatcagaaactacttcagta 196  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||| |||| || |||||||| ||||||||| |||| ||| ||||||||||||    
T  8455779 tatatcatggcagagttggtagctggggcatttcttcagtcttcctttcaattgattatcgagaagttagcttcggttgatattagagactacttcagta 8455680  T
Q  197 gttataatgtcgatg 211  Q
    || | ||||| ||||    
T  8455679 gtaacaatgttgatg 8455665  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 8479867 - 8479927
Alignment:
Q  153 aattgagaagttggcttcggttcatatcagaaactacttcagtagttataatgtcgatgat 213  Q
    |||||||||||||||||||||| |||| ||| |||||||||||| | ||||||| ||||||    
T  8479867 aattgagaagttggcttcggttgatattagagactacttcagtaataataatgtggatgat 8479927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 8590927 - 8590885
Alignment:
Q  14 ataattcttgtttcatttaattttacttgactgaaagaacaca 56  Q
    ||||||||||||||||||||||||| ||||| ||||||| |||    
T  8590927 ataattcttgtttcatttaattttatttgacagaaagaataca 8590885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 6478807 - 6478844
Alignment:
Q  12 agataattcttgtttcatttaattttacttgactgaaa 49  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  6478807 agataattcttgtttcatttaattttaattgacagaaa 6478844  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 8455846 - 8455813
Alignment:
Q  21 ttgtttcatttaattttacttgactgaaagaaca 54  Q
    |||||||||||||||||||||||| |||||||||    
T  8455846 ttgtttcatttaattttacttgacagaaagaaca 8455813  T

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Target: scaffold0425 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 6296 - 6496
Alignment:
Q  14 ataattcttgtttcatttaattttacttgactgaaagaacacaattac--cttgcagaggtttcaagacttgtgcttcaggct-aatatatcatggcaga 110  Q
    |||||| |||||||||| | ||||| ||||  ||||||||||| || |  |||||||||| || ||||||||||||| ||||| || |||||||||||||    
T  6296 ataattattgtttcattca-ttttatttgatagaaagaacacatttccatcttgcagaggctttaagacttgtgctttaggctcaacatatcatggcaga 6394  T
Q  111 attggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttcggttcatatcagaaactacttcagtagttataatgtcgat 210  Q
     |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||  ||||||| ||||||| |||||| | ||||| |||    
T  6395 gttggtagccggggcatttcttcagtcttcctttcaagtgattattgagaagttggcttccgttggtatcagagactactttagtagtaacaatgttgat 6494  T
Q  211 ga 212  Q
    ||    
T  6495 ga 6496  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 41068269 - 41068320
Alignment:
Q  84 tgcttcaggct-aatatatcatggcagaattggtagctggggcatttcttca 134  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  41068269 tgcttcaggctcaatgtatcatggcagagttggtagctggggcatttcttca 41068320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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